Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL841_RS18680 Genome accession   NZ_CP157636
Coordinates   3970619..3971848 (+) Length   409 a.a.
NCBI ID   WP_015866995.1    Uniprot ID   A0AAW8EJE7
Organism   Variovorax paradoxus strain 4MFCol3.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3965619..3976848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL841_RS18650 (ABL841_18635) cgtA 3965695..3966783 (-) 1089 WP_018906809.1 Obg family GTPase CgtA -
  ABL841_RS18655 (ABL841_18640) rpmA 3966854..3967111 (-) 258 WP_015866991.1 50S ribosomal protein L27 -
  ABL841_RS18660 (ABL841_18645) rplU 3967124..3967435 (-) 312 WP_015866992.1 50S ribosomal protein L21 -
  ABL841_RS18665 (ABL841_18650) - 3967624..3968616 (+) 993 WP_021008896.1 polyprenyl synthetase family protein -
  ABL841_RS18675 (ABL841_18660) pilB 3968856..3970589 (+) 1734 WP_015866994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL841_RS18680 (ABL841_18665) pilC 3970619..3971848 (+) 1230 WP_015866995.1 type II secretion system F family protein Machinery gene
  ABL841_RS18685 (ABL841_18670) - 3971848..3972813 (+) 966 WP_018906808.1 prepilin peptidase -
  ABL841_RS18690 (ABL841_18675) coaE 3972824..3973429 (+) 606 WP_015866997.1 dephospho-CoA kinase -
  ABL841_RS18695 (ABL841_18680) - 3973508..3975001 (+) 1494 WP_015866998.1 MBOAT family O-acyltransferase -
  ABL841_RS18700 (ABL841_18685) - 3975008..3976027 (+) 1020 WP_015866999.1 hypothetical protein -
  ABL841_RS18705 (ABL841_18690) zapD 3976064..3976819 (+) 756 WP_018906807.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44736.33 Da        Isoelectric Point: 9.6463

>NTDB_id=1007910 ABL841_RS18680 WP_015866995.1 3970619..3971848(+) (pilC) [Variovorax paradoxus strain 4MFCol3.1]
MATVASTRTSNTLKEFVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGVVGGGT
YFFLQAWKRNERVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007910 ABL841_RS18680 WP_015866995.1 3970619..3971848(+) (pilC) [Variovorax paradoxus strain 4MFCol3.1]
ATGGCAACAGTGGCATCCACCCGCACCTCGAACACGCTCAAGGAATTTGTCTACGAGTGGGAGGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTCCGGGCCGCCGGCGAGAACCAGGTGCAGGCCGCCCTGCGGCGCCAGGGCGTCCTGGCGT
CCAAGATCAAGAAGCGCCGCATGCGTTCGGGCAAGAGCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGCTGGCA
ACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAATGCGAACCCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGTCCGCCTTCCGCAAGTTTCCGAAGTACTTCG
ACAACCTCTACTGCAACCTGGTGGAAGCCGGCGAGGCGGCCGGTATCCTGGAAGACCTGCTGGACCGCCTGGCCACCTAC
ATGGAAAAGACCGAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCCGTGGTGGTGGTCGCGTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATTCCCGCCTTCAAGCAGGTGTTCACCTCGTTCGGCGCCGACCTGCCTGCGC
CCACGCTGTTCGTGATGGCGATGAGCGAATTCTTCGTCTCCTACTGGTGGCTGATCTTCGGCGTGGTCGGCGGCGGCACC
TACTTCTTCCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGCGGGTCATGGACCGCGCGCTGCTGCGCGTGCCGATCTT
CGGTACGCTGATCGAGAAGTCGTGCGTGGCCCGCTGGACCCGCACCCTTGCCACGATGTTCGCGGCCGGCGTTCCGCTGG
TCGAGGCGCTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGGCCAAGATCCAGCAGGAAGTC
TCGACCGGCACCAGCCTCACGACGGCCATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACGGCCATCGG
CGAGGAGTCCGGCTCGATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCGTGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCGATCTTCAAGTTGGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54

97.8

0.528
  pilG Neisseria gonorrhoeae MS11

52.525

96.822

0.509
  pilG Neisseria meningitidis 44/76-A

52.273

96.822

0.506
  pilC Acinetobacter baylyi ADP1

51.508

97.311

0.501
  pilC Acinetobacter baumannii D1279779

49.622

97.066

0.482
  pilC Legionella pneumophila strain ERS1305867

48.883

98.533

0.482
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

38.663

100

0.396
  pilC Vibrio campbellii strain DS40M4

39.651

98.044

0.389

Multiple sequence alignment