Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL842_RS20905 Genome accession   NZ_CP157630
Coordinates   4396647..4397876 (+) Length   409 a.a.
NCBI ID   WP_015866995.1    Uniprot ID   A0AAW8EJE7
Organism   Variovorax paradoxus strain 349MFTsu5.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4391647..4402876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL842_RS20875 (ABL842_20865) cgtA 4391723..4392811 (-) 1089 WP_015866990.1 Obg family GTPase CgtA -
  ABL842_RS20880 (ABL842_20870) rpmA 4392882..4393139 (-) 258 WP_015866991.1 50S ribosomal protein L27 -
  ABL842_RS20885 (ABL842_20875) rplU 4393152..4393463 (-) 312 WP_015866992.1 50S ribosomal protein L21 -
  ABL842_RS20890 (ABL842_20880) - 4393652..4394644 (+) 993 WP_021008896.1 polyprenyl synthetase family protein -
  ABL842_RS20900 (ABL842_20890) pilB 4394884..4396617 (+) 1734 WP_015866994.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL842_RS20905 (ABL842_20895) pilC 4396647..4397876 (+) 1230 WP_015866995.1 type II secretion system F family protein Machinery gene
  ABL842_RS20910 (ABL842_20900) - 4397876..4398841 (+) 966 WP_015866996.1 A24 family peptidase -
  ABL842_RS20915 (ABL842_20905) coaE 4398852..4399457 (+) 606 WP_015866997.1 dephospho-CoA kinase -
  ABL842_RS20920 (ABL842_20910) - 4399536..4401029 (+) 1494 WP_027731016.1 MBOAT family O-acyltransferase -
  ABL842_RS20925 (ABL842_20915) - 4401036..4402055 (+) 1020 WP_015866999.1 hypothetical protein -
  ABL842_RS20930 (ABL842_20920) zapD 4402092..4402847 (+) 756 WP_018906807.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44736.33 Da        Isoelectric Point: 9.6463

>NTDB_id=1007857 ABL842_RS20905 WP_015866995.1 4396647..4397876(+) (pilC) [Variovorax paradoxus strain 349MFTsu5.1]
MATVASTRTSNTLKEFVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGVVGGGT
YFFLQAWKRNERVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007857 ABL842_RS20905 WP_015866995.1 4396647..4397876(+) (pilC) [Variovorax paradoxus strain 349MFTsu5.1]
ATGGCAACAGTGGCATCCACCCGCACCTCGAACACGCTCAAGGAATTTGTCTACGAGTGGGAGGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTCCGGGCCGCCGGCGAGAACCAGGTGCAGGCCGCCCTGCGGCGCCAGGGCGTCCTGGCGT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGAGCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGCTGGCA
ACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAATGCGAACCCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGTCCGCCTTCCGCAAGTTTCCGAAGTACTTCG
ACAACCTCTACTGCAACCTGGTGGAAGCCGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTGGACCGCCTGGCCACCTAC
ATGGAAAAGACCGAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCCGTGGTGGTGGTCGCGTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATTCCGGCCTTCAAGCAGGTGTTCACCTCGTTCGGCGCCGACCTGCCCGCGC
CCACGCTGTTCGTGATGGCCATGAGCGAATTCTTCGTCTCCTACTGGTGGCTGATCTTCGGCGTGGTCGGCGGCGGCACC
TACTTCTTCCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGCGGGTCATGGACCGCGCGCTGCTGCGCGTGCCGATCTT
CGGTACGCTGATCGAGAAGTCGTGCGTGGCCCGCTGGACCCGCACCCTTGCCACGATGTTCGCGGCCGGCGTTCCGCTGG
TCGAGGCGCTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGGCCAAGATCCAGCAGGAAGTC
TCGACCGGCACCAGCCTCACGACGGCCATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACGGCGATCGG
CGAGGAGTCCGGCTCGATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCGTGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCGATCTTCAAGTTGGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54

97.8

0.528
  pilG Neisseria gonorrhoeae MS11

52.525

96.822

0.509
  pilG Neisseria meningitidis 44/76-A

52.273

96.822

0.506
  pilC Acinetobacter baylyi ADP1

51.508

97.311

0.501
  pilC Acinetobacter baumannii D1279779

49.622

97.066

0.482
  pilC Legionella pneumophila strain ERS1305867

48.883

98.533

0.482
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

38.663

100

0.396
  pilC Vibrio campbellii strain DS40M4

39.651

98.044

0.389

Multiple sequence alignment