Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL844_RS25860 Genome accession   NZ_CP157622
Coordinates   5573639..5574868 (+) Length   409 a.a.
NCBI ID   WP_184642161.1    Uniprot ID   -
Organism   Variovorax sp. 278MFTsu5.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5568639..5579868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL844_RS25830 (ABL844_25800) cgtA 5568704..5569780 (-) 1077 WP_418129499.1 Obg family GTPase CgtA -
  ABL844_RS25835 (ABL844_25805) rpmA 5569852..5570112 (-) 261 WP_093057448.1 50S ribosomal protein L27 -
  ABL844_RS25840 (ABL844_25810) rplU 5570134..5570445 (-) 312 WP_019656543.1 50S ribosomal protein L21 -
  ABL844_RS25845 (ABL844_25815) - 5570642..5571634 (+) 993 WP_126024680.1 polyprenyl synthetase family protein -
  ABL844_RS25855 (ABL844_25825) pilB 5571879..5573612 (+) 1734 WP_126024679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL844_RS25860 (ABL844_25830) pilC 5573639..5574868 (+) 1230 WP_184642161.1 type II secretion system F family protein Machinery gene
  ABL844_RS25865 (ABL844_25835) - 5574868..5575833 (+) 966 WP_418129500.1 prepilin peptidase -
  ABL844_RS25870 (ABL844_25840) coaE 5575841..5576452 (+) 612 WP_418129501.1 dephospho-CoA kinase -
  ABL844_RS25875 (ABL844_25845) - 5576522..5578015 (+) 1494 WP_126024676.1 MBOAT family O-acyltransferase -
  ABL844_RS25880 (ABL844_25850) - 5578020..5579054 (+) 1035 WP_418117679.1 hypothetical protein -
  ABL844_RS25885 (ABL844_25855) zapD 5579085..5579840 (+) 756 WP_418129502.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44820.47 Da        Isoelectric Point: 9.6798

>NTDB_id=1007784 ABL844_RS25860 WP_184642161.1 5573639..5574868(+) (pilC) [Variovorax sp. 278MFTsu5.1]
MATVASSRTQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANPSVAKLLNDIRSDVETGSSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPTSVIVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGGVGGGI
YFFLQAWKRNERFQRFMDRLLLRVPIFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007784 ABL844_RS25860 WP_184642161.1 5573639..5574868(+) (pilC) [Variovorax sp. 278MFTsu5.1]
ATGGCTACAGTGGCATCCTCCCGCACCCAGCCCACACACAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTACGCGGCGAACTTCGTGCTGCCGGCGAAAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAGCGCCGCATGCGCTCAGGCAAGGCGATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGCTGGCG
ACCATGATGAAGGCCGGCGTGCCCCTGATGCAGTCCTTCGATATCGTCGGGCGCGGCAATGCGAACCCGAGTGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCAGTTCGCTCTCGTCCGCCTTCCGCAAGTTTCCGAAGTACTTCG
ACAATCTCTACTGCAACCTGGTGGAGGCTGGCGAGGCGGCCGGCATTCTGGAAGAACTGCTGGACCGGCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCTCTGATGTACCCCACTTCCGTGATCGTCGTGGCCTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATCCCGGCGTTCAAGCAGGTGTTCACGTCGTTCGGAGCCGACCTGCCTGCCC
CGACGCTGTTCGTGATGGCGATGAGCGAGTTCTTCGTCTCCTACTGGTGGCTGATCTTCGGTGGCGTCGGCGGCGGAATC
TATTTCTTCCTGCAAGCCTGGAAACGCAATGAGCGTTTCCAGCGCTTCATGGACCGCCTGCTGCTGAGAGTGCCGATCTT
CGGCGCGCTGATCGAAAAATCCTGCGTCGCCCGCTGGACCCGCACCCTGGCCACCATGTTCGCCGCCGGCGTCCCGCTGG
TCGAAGCCCTCGACTCCGTGGGCGGCGCCTCCGGCAACACCGTCTACGGCGACGCCACCGCGAAGATCCAGCAGGAAGTC
TCCACCGGCACCAGCCTCACGGCCGCCATGACCAACGTCAACCTGTTCCCGTCCATGGTGATCCAGATGACCGCCATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTGGGCAAGGCCGCAGACTTCTACGAATCCGAGGTGGACGACATGGTCGCGG
GCCTCTCCAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.094

98.533

0.533
  pilG Neisseria gonorrhoeae MS11

53.652

97.066

0.521
  pilG Neisseria meningitidis 44/76-A

53.401

97.066

0.518
  pilC Acinetobacter baylyi ADP1

52.513

97.311

0.511
  pilC Acinetobacter baumannii D1279779

49.878

100

0.501
  pilC Legionella pneumophila strain ERS1305867

49.749

97.311

0.484
  pilC Vibrio cholerae strain A1552

41.206

97.311

0.401
  pilC Thermus thermophilus HB27

37.709

100

0.386
  pilC Vibrio campbellii strain DS40M4

38.958

98.533

0.384

Multiple sequence alignment