Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABL843_RS24900 Genome accession   NZ_CP157620
Coordinates   5471843..5473072 (+) Length   409 a.a.
NCBI ID   WP_418117676.1    Uniprot ID   -
Organism   Variovorax sp. 350MFTsu5.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5466843..5478072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL843_RS24870 (ABL843_24870) cgtA 5466908..5467984 (-) 1077 WP_418117675.1 Obg family GTPase CgtA -
  ABL843_RS24875 (ABL843_24875) rpmA 5468056..5468316 (-) 261 WP_093057448.1 50S ribosomal protein L27 -
  ABL843_RS24880 (ABL843_24880) rplU 5468338..5468649 (-) 312 WP_019656543.1 50S ribosomal protein L21 -
  ABL843_RS24885 (ABL843_24885) - 5468846..5469838 (+) 993 WP_126024680.1 polyprenyl synthetase family protein -
  ABL843_RS24895 (ABL843_24895) pilB 5470083..5471816 (+) 1734 WP_126024679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABL843_RS24900 (ABL843_24900) pilC 5471843..5473072 (+) 1230 WP_418117676.1 type II secretion system F family protein Machinery gene
  ABL843_RS24905 (ABL843_24905) - 5473072..5474037 (+) 966 WP_418117677.1 prepilin peptidase -
  ABL843_RS24910 (ABL843_24910) coaE 5474045..5474656 (+) 612 WP_418117678.1 dephospho-CoA kinase -
  ABL843_RS24915 (ABL843_24915) - 5474726..5476219 (+) 1494 WP_126024676.1 MBOAT family O-acyltransferase -
  ABL843_RS24920 (ABL843_24920) - 5476224..5477258 (+) 1035 WP_418117679.1 hypothetical protein -
  ABL843_RS24925 (ABL843_24925) zapD 5477289..5478044 (+) 756 WP_418117680.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44709.35 Da        Isoelectric Point: 9.5420

>NTDB_id=1007764 ABL843_RS24900 WP_418117676.1 5471843..5473072(+) (pilC) [Variovorax sp. 350MFTsu5.1]
MATVASSRTQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPTSVIVVAFVVVAIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISEFFVSYWWLIFGGLGGGI
YFFLQAWKRNERVQRTMDRLLLRIPVFGVLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1007764 ABL843_RS24900 WP_418117676.1 5471843..5473072(+) (pilC) [Variovorax sp. 350MFTsu5.1]
ATGGCTACAGTGGCATCCTCCCGCACCCAGCCCACACACAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTACGCGGCGAACTTCGTGCTGCCGGCGAAAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGGCGATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGCTGGCG
ACCATGATGAAGGCCGGCGTGCCGCTGATGCAGTCCTTCGATATCGTCGGGCGCGGCAATGCGAATGCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGGCCGCCTTCCGCAAGTTTCCGAAGTACTTCG
ACAACCTCTACTGCAATCTGGTGGAGGCTGGCGAGGCGGCCGGTATTCTGGAAGAACTACTGGACCGGCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCTCTGATGTACCCCACTTCCGTGATCGTCGTGGCCTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATCCCGGCGTTCAAAGAGGTATTCACGTCCTTCGGTGCTGACTTGCCTGCGC
CTACGCTATTTGTGATGGGCATTAGCGAATTTTTCGTCTCTTATTGGTGGCTCATCTTCGGCGGCCTGGGCGGCGGCATC
TACTTCTTTCTGCAGGCTTGGAAACGAAACGAACGCGTACAAAGGACCATGGACCGCCTTCTGCTGAGAATTCCGGTTTT
CGGCGTACTGATCGAAAAGTCCTGCGTCGCCCGCTGGACCCGCACTCTGGCCACCATGTTCGCCGCCGGCGTCCCGCTGG
TCGAAGCCCTCGACTCCGTGGGCGGCGCCTCCGGCAACACCGTCTACGGCGACGCCACCGCGAAGATCCAGCAGGAAGTC
TCCACCGGCACCAGCCTCACGGCGGCCATGACCAACGTCAACCTGTTCCCGTCCATGGTGATCCAGATGACCGCCATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTGGGCAAGGCCGCAGACTTCTACGAATCCGAGGTGGACGACATGGTCGCGG
GCCTCTCCAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.598

98.533

0.528
  pilG Neisseria gonorrhoeae MS11

53.149

97.066

0.516
  pilG Neisseria meningitidis 44/76-A

52.897

97.066

0.513
  pilC Acinetobacter baylyi ADP1

51.508

97.311

0.501
  pilC Legionella pneumophila strain ERS1305867

50.253

96.822

0.487
  pilC Acinetobacter baumannii D1279779

48.418

100

0.487
  pilC Vibrio cholerae strain A1552

41.206

97.311

0.401
  pilC Vibrio campbellii strain DS40M4

38.958

98.533

0.384
  pilC Thermus thermophilus HB27

37.47

100

0.384

Multiple sequence alignment