Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABLV34_RS05710 Genome accession   NZ_CP157597
Coordinates   1262571..1263833 (-) Length   420 a.a.
NCBI ID   WP_069288196.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain Xcm TX9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1257571..1268833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLV34_RS05680 (ABLV34_05680) - 1257911..1258297 (-) 387 WP_125825481.1 hypothetical protein -
  ABLV34_RS05685 (ABLV34_05685) - 1258294..1258443 (-) 150 WP_157733688.1 hypothetical protein -
  ABLV34_RS05690 (ABLV34_05690) - 1258821..1259309 (-) 489 Protein_1113 RHS repeat-associated core domain-containing protein -
  ABLV34_RS05695 (ABLV34_05695) - 1259374..1260530 (+) 1157 WP_087942126.1 IS3-like element ISXc8 family transposase -
  ABLV34_RS05700 (ABLV34_05700) coaE 1261079..1261687 (-) 609 WP_005915836.1 dephospho-CoA kinase -
  ABLV34_RS05705 (ABLV34_05705) - 1261701..1262564 (-) 864 WP_003491180.1 A24 family peptidase -
  ABLV34_RS05710 (ABLV34_05710) pilC 1262571..1263833 (-) 1263 WP_069288196.1 type II secretion system F family protein Machinery gene
  ABLV34_RS05715 (ABLV34_05715) - 1263944..1265905 (-) 1962 WP_005915833.1 hypothetical protein -
  ABLV34_RS05720 (ABLV34_05720) - 1265972..1266388 (-) 417 WP_033481911.1 pilin -
  ABLV34_RS05725 (ABLV34_05725) - 1266831..1267115 (+) 285 WP_232515052.1 SMR family transporter -
  ABLV34_RS05730 (ABLV34_05730) - 1267120..1267914 (+) 795 WP_005915828.1 glycosyltransferase -
  ABLV34_RS05735 (ABLV34_05735) - 1267917..1268114 (+) 198 Protein_1122 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45933.45 Da        Isoelectric Point: 10.3728

>NTDB_id=1007597 ABLV34_RS05710 WP_069288196.1 1262571..1263833(-) (pilC) [Xanthomonas citri pv. malvacearum strain Xcm TX9]
MSALGSTVKKGAKPANRVNAMTSFVWEGTDKRGVKMKGDELARNANMLRAELRRRGINPTVVKTKPKPLFGATGKPIKPK
DIAFFSRQIATMMKSGVPMVGTLEIIGEGSKNPRMRKMVGEIRTDIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVL
DTVLDTVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFETVFSSFGAELPAFTQMIVNLSRFMVSWWF
PILLVIVGSAVGLIMAYKRSPRMQHLFDRLILKVPVIGKIMHDSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNLSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMIFIGTI
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1007597 ABLV34_RS05710 WP_069288196.1 1262571..1263833(-) (pilC) [Xanthomonas citri pv. malvacearum strain Xcm TX9]
ATGTCAGCACTTGGCAGCACTGTGAAGAAGGGGGCTAAACCGGCCAATCGCGTAAACGCGATGACGTCGTTCGTTTGGGA
AGGGACAGACAAACGCGGCGTCAAGATGAAGGGGGATGAACTGGCTCGCAATGCAAATATGTTGCGCGCCGAACTCCGTC
GCAGGGGGATCAATCCCACTGTCGTCAAGACAAAGCCTAAGCCGCTGTTTGGCGCAACTGGCAAGCCGATCAAACCTAAG
GACATCGCATTTTTCAGTCGCCAGATCGCGACCATGATGAAATCCGGTGTCCCGATGGTCGGCACTCTGGAAATCATCGG
CGAGGGCTCCAAAAACCCCCGCATGCGAAAGATGGTTGGCGAGATTCGTACCGACATCGAAGGCGGATCGTCGCTCAACG
AAGCGATCAGCAGACATCCAGTGCAGTTTGACGAGCTCTATCGCAACTTGGTCCGGGCCGGCGAAAGCGCCGGCGTGCTG
GATACCGTGCTAGATACCGTGGCGACCTACAAGGAAAATATCGAAGCACTGAAGGGCAAGATTAAAAAAGCCCTTTTTTA
TCCTGCAATGGTGATGGCAGTAGCGTTGATCGTCAGTTCCATATTGCTGATCTGGGTGGTACCACAGTTTGAGACGGTAT
TCTCCAGCTTCGGGGCGGAATTACCTGCGTTCACCCAGATGATCGTGAATCTTTCTCGATTCATGGTTTCCTGGTGGTTC
CCAATCCTGTTAGTGATCGTTGGGTCGGCCGTTGGGCTGATAATGGCCTACAAGCGGTCACCCCGGATGCAACATTTATT
TGATCGTCTGATTTTAAAAGTGCCAGTAATCGGCAAGATTATGCACGACAGTTCGATTGCCCGATTTGCACGAACAACCG
CCGTCACCTTCAAGGCAGGCGTTCCTTTGGTCGAAGCGCTGGGAATCGTCGCGGGCGCGACTGGTAACAAGGTCTATGAG
GAAGCAGTCCTGAGGATGCGAGACGACGTATCTGTTGGCTACCCTGTCAATCTGTCGATGAAGCAAGTCAACCTTTTTCC
GCACATGGTGATTCAGATGACTGCGATCGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCTGAATACT
TTGAGCAAGAAGTCAACAACGCCGTCGATGCATTGAGCAGCCTGCTTGAGCCTATGATCATGATCTTTATTGGCACTATC
GTCGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.286

0.51
  pilC Legionella pneumophila strain ERS1305867

51.128

95

0.486
  pilC Acinetobacter baylyi ADP1

50

96.667

0.483
  pilC Acinetobacter baumannii D1279779

48.148

96.429

0.464
  pilG Neisseria meningitidis 44/76-A

42.928

95.952

0.412
  pilG Neisseria gonorrhoeae MS11

42.394

95.476

0.405
  pilC Vibrio cholerae strain A1552

39.163

96.667

0.379
  pilC Vibrio campbellii strain DS40M4

39.25

95.238

0.374
  pilC Thermus thermophilus HB27

38.366

96.19

0.369

Multiple sequence alignment