Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABGM96_RS07535 Genome accession   NZ_CP157360
Coordinates   1549153..1550385 (+) Length   410 a.a.
NCBI ID   WP_034315395.1    Uniprot ID   A0AAN2PGV7
Organism   Peribacillus frigoritolerans strain C1141     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1544153..1555385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGM96_RS07510 ymfI 1545365..1546090 (+) 726 WP_375563760.1 elongation factor P 5-aminopentanone reductase -
  ABGM96_RS07515 - 1546172..1546429 (+) 258 WP_034313532.1 DUF3243 domain-containing protein -
  ABGM96_RS07520 - 1546672..1547463 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  ABGM96_RS07525 - 1547472..1548380 (+) 909 WP_309247765.1 helix-turn-helix domain-containing protein -
  ABGM96_RS07530 pgsA 1548546..1549130 (+) 585 WP_048684722.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABGM96_RS07535 cinA 1549153..1550385 (+) 1233 WP_034315395.1 competence/damage-inducible protein A Machinery gene
  ABGM96_RS07540 recA 1550735..1551781 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  ABGM96_RS07545 rny 1552135..1553694 (+) 1560 WP_034313519.1 ribonuclease Y -
  ABGM96_RS07550 - 1553847..1554643 (+) 797 Protein_1459 TIGR00282 family metallophosphoesterase -
  ABGM96_RS07555 spoVS 1554817..1555077 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44983.29 Da        Isoelectric Point: 5.0424

>NTDB_id=1006266 ABGM96_RS07535 WP_034315395.1 1549153..1550385(+) (cinA) [Peribacillus frigoritolerans strain C1141]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1006266 ABGM96_RS07535 WP_034315395.1 1549153..1550385(+) (cinA) [Peribacillus frigoritolerans strain C1141]
ATGGATGCAGAAATCATTGCAGTGGGTTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGAATCAACGTTTTTTACCATACTGTGGTCGGAGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTGGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTTTTGTCCAAATCTGGGATTACATATATGCTCCTGCCTGGACCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAAATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCTAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCCGGGTCGGAAAGTTCCATTATGGAAGTGATAATACTTCTCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCGGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38

Multiple sequence alignment