Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   FGL23_RS10655 Genome accession   NZ_LR594049
Coordinates   2183330..2184523 (+) Length   397 a.a.
NCBI ID   WP_061603308.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2178330..2189523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS10615 (NCTC10231_02125) ychF 2178641..2179756 (-) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  FGL23_RS10630 (NCTC10231_02128) comE/comE2 2180078..2180845 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  FGL23_RS10635 (NCTC10231_02129) comD/comD1 2180842..2182203 (-) 1362 WP_061603310.1 competence system sensor histidine kinase ComD Regulator
  FGL23_RS10640 (NCTC10231_02130) comC/comC1 2182219..2182371 (-) 153 WP_012131079.1 bacteriocin Regulator
  FGL23_RS10650 (NCTC10231_02132) rlmH 2182657..2183136 (-) 480 WP_061603309.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL23_RS10655 (NCTC10231_02133) htrA 2183330..2184523 (+) 1194 WP_061603308.1 S1C family serine protease Regulator
  FGL23_RS10660 (NCTC10231_02134) spo0J 2184589..2185353 (+) 765 WP_061601400.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 42182.88 Da        Isoelectric Point: 5.4898

>NTDB_id=1006148 FGL23_RS10655 WP_061603308.1 2183330..2184523(+) (htrA) [Streptococcus gordonii strain NCTC10231]
MKNSSNFFKKTLQVFIILFVGFIGGVAGTWGLSYFSTPHSATNNNQKTATTITTSYKNSNSTTKAVDKVKDAVVSVITYS
ESSSDAIFDNNNSGNENDQVASEGSGVIYRKDKDYAYLVTNTHVINGAKKVDIRLADGNKVPGEIVGTDTYSDISVVRIP
ADKVKNVAEFGDSSKLTVGETAIAIGSPLGSDYANTVTQGIVSSLSRNVSSRSEDGQTIATQAIQTDAAINPGNSGGPLV
NIQGQVIGITSSKIANTNNGSTSVEGMGFAIPSNDVVNIIEQLEKNGKVIRPALGIQMVNLSSLSSSSSDRLKLPDNVKN
GVVVRSTQTGMPADGKLQKYDVITKIDDTEISSASDIQSALYKHSINEEIKVTYYRDGKEQTTTIKLTKSTDDLSSE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=1006148 FGL23_RS10655 WP_061603308.1 2183330..2184523(+) (htrA) [Streptococcus gordonii strain NCTC10231]
ATGAAAAATTCTTCAAATTTCTTCAAAAAAACATTGCAAGTTTTCATTATCTTGTTTGTTGGTTTTATAGGTGGTGTTGC
TGGAACATGGGGACTTTCTTATTTTTCAACACCTCACTCAGCCACAAATAATAATCAGAAAACAGCTACTACAATAACAA
CATCCTATAAAAATAGTAATTCTACAACAAAGGCTGTTGATAAAGTTAAAGACGCAGTTGTCTCTGTCATTACATATTCT
GAATCTAGTTCAGATGCTATTTTTGACAACAATAATTCAGGAAACGAAAATGATCAGGTAGCTAGCGAAGGATCTGGTGT
TATCTATAGAAAAGATAAAGACTATGCTTACTTAGTTACCAATACACACGTTATCAATGGAGCAAAAAAGGTTGATATCC
GTCTTGCTGATGGGAATAAGGTTCCTGGTGAAATAGTCGGAACTGATACATATTCTGATATTTCTGTAGTCAGAATTCCT
GCTGATAAGGTTAAAAATGTGGCTGAATTTGGGGATTCTAGTAAATTAACTGTTGGAGAAACTGCCATTGCAATCGGAAG
CCCTCTTGGTTCTGATTATGCTAATACAGTAACTCAGGGAATTGTTTCTAGTCTAAGCCGTAATGTTTCTTCACGATCAG
AAGATGGTCAGACAATTGCTACTCAAGCTATTCAAACTGATGCAGCAATTAATCCAGGTAACTCTGGTGGTCCTCTTGTA
AACATTCAAGGTCAAGTTATTGGTATTACCTCTAGTAAAATTGCTAACACCAATAATGGTAGTACTTCTGTTGAGGGAAT
GGGATTTGCAATCCCATCCAATGATGTTGTAAATATCATTGAACAATTAGAAAAGAATGGTAAAGTCATTCGACCAGCAT
TAGGAATTCAAATGGTCAACTTAAGTAGTTTGTCTTCTTCAAGCTCTGATCGATTAAAACTTCCAGACAATGTTAAAAAT
GGTGTCGTTGTTCGTTCAACACAAACTGGAATGCCTGCTGATGGTAAGTTACAAAAATATGATGTGATTACAAAAATTGA
TGATACAGAAATATCATCTGCTAGTGATATCCAATCAGCTCTTTATAAACATTCGATTAATGAAGAAATAAAAGTTACTT
ATTACCGTGATGGAAAAGAGCAAACAACAACTATTAAACTAACTAAATCAACTGATGATTTAAGCTCTGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

98.237

100

0.982

  htrA Streptococcus mitis NCTC 12261

65.829

100

0.66

  htrA Streptococcus pneumoniae Rx1

65.909

99.748

0.657

  htrA Streptococcus pneumoniae D39

65.909

99.748

0.657

  htrA Streptococcus pneumoniae R6

65.909

99.748

0.657

  htrA Streptococcus pneumoniae TIGR4

65.909

99.748

0.657

  htrA Streptococcus mutans UA159

55.89

100

0.562