Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABG082_RS05080 Genome accession   NZ_CP157353
Coordinates   999276..999854 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus sp. BS1807G30     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 994276..1004854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS05060 (ABG082_05060) - 994770..996065 (-) 1296 WP_019743333.1 globin-coupled sensor protein -
  ABG082_RS05065 (ABG082_05065) - 996156..997688 (-) 1533 WP_348936623.1 FAD-dependent oxidoreductase -
  ABG082_RS05070 (ABG082_05070) - 997831..998691 (+) 861 WP_348936624.1 SDR family oxidoreductase -
  ABG082_RS05075 (ABG082_05075) - 998750..998986 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  ABG082_RS05080 (ABG082_05080) comK 999276..999854 (+) 579 WP_017366958.1 competence protein ComK Regulator
  ABG082_RS05085 (ABG082_05085) - 999998..1001104 (+) 1107 WP_282833500.1 D-TA family PLP-dependent enzyme -
  ABG082_RS05090 (ABG082_05090) - 1001406..1001888 (+) 483 WP_008348662.1 hypothetical protein -
  ABG082_RS05095 (ABG082_05095) - 1001919..1003358 (-) 1440 WP_019743338.1 PLP-dependent aminotransferase family protein -
  ABG082_RS05100 (ABG082_05100) - 1003502..1004671 (+) 1170 WP_017366962.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=1006149 ABG082_RS05080 WP_017366958.1 999276..999854(+) (comK) [Bacillus sp. BS1807G30]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1006149 ABG082_RS05080 WP_017366958.1 999276..999854(+) (comK) [Bacillus sp. BS1807G30]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATACGAAGTAACAGGAATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTTCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615

Multiple sequence alignment