Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   FGL23_RS10660 Genome accession   NZ_LR594049
Coordinates   2184589..2185353 (+) Length   254 a.a.
NCBI ID   WP_061601400.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2179589..2190353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS10630 (NCTC10231_02128) comE/comE2 2180078..2180845 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  FGL23_RS10635 (NCTC10231_02129) comD/comD1 2180842..2182203 (-) 1362 WP_061603310.1 competence system sensor histidine kinase ComD Regulator
  FGL23_RS10640 (NCTC10231_02130) comC/comC1 2182219..2182371 (-) 153 WP_012131079.1 bacteriocin Regulator
  FGL23_RS10650 (NCTC10231_02132) rlmH 2182657..2183136 (-) 480 WP_061603309.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL23_RS10655 (NCTC10231_02133) htrA 2183330..2184523 (+) 1194 WP_061603308.1 S1C family serine protease Regulator
  FGL23_RS10660 (NCTC10231_02134) spo0J 2184589..2185353 (+) 765 WP_061601400.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 254 a.a.        Molecular weight: 29268.87 Da        Isoelectric Point: 9.0470

>NTDB_id=1006149 FGL23_RS10660 WP_061601400.1 2184589..2185353(+) (spo0J) [Streptococcus gordonii strain NCTC10231]
MENYQYILIKDIHTNPYQPRKDFSIDKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQNLIHKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGHISQAHA
RLLIKLKEKDQRKWLENIISSDISVRKLEKLLQTSPTQPKSENVQKIFIEEEEENLKKLLGVEVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1006149 FGL23_RS10660 WP_061601400.1 2184589..2185353(+) (spo0J) [Streptococcus gordonii strain NCTC10231]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGATAA
GTTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATTATTGTTAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGACGATTTAGGGCAGCTAAAATAGCAGGTTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAGAATCTTATTCACAAGGGATTAACGCATGATGAAATCGCTCAAATCATGGGAAAATCGAGACCTTATATTA
CTAATCTTGTTCGCTTGCTACAGCTACCTGATTTTGTCTTAAAAGCTGTAAAAGAGGGTCATATTTCTCAAGCTCATGCT
CGGTTACTAATAAAGCTTAAGGAAAAAGACCAGAGAAAATGGCTTGAAAATATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAAAAATTATTACAGACTTCTCCTACTCAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATCGAAGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTCGAAGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.937

100

0.539


Multiple sequence alignment