Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUD44_RS09580 Genome accession   NZ_AP027275
Coordinates   1914153..1914647 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus formosensis strain MS200408A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1909153..1919647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS09550 (LFMS200408A_18980) - 1909486..1910679 (+) 1194 WP_096368948.1 MFS transporter -
  QUD44_RS09555 (LFMS200408A_18990) recX 1910773..1911606 (+) 834 WP_096368947.1 recombination regulator RecX -
  QUD44_RS09560 (LFMS200408A_19000) - 1911690..1912538 (+) 849 WP_017369518.1 MurR/RpiR family transcriptional regulator -
  QUD44_RS09565 (LFMS200408A_19010) - 1912570..1912878 (+) 309 WP_096368946.1 DUF960 domain-containing protein -
  QUD44_RS09570 (LFMS200408A_19020) - 1912912..1913679 (-) 768 WP_096368945.1 metallophosphoesterase -
  QUD44_RS09575 (LFMS200408A_19030) rpsR 1913788..1914033 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  QUD44_RS09580 (LFMS200408A_19040) ssb 1914153..1914647 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  QUD44_RS09585 (LFMS200408A_19050) rpsF 1914685..1914978 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  QUD44_RS09590 (LFMS200408A_19060) - 1915164..1915376 (-) 213 WP_016171080.1 hypothetical protein -
  QUD44_RS09595 (LFMS200408A_19070) - 1915851..1917314 (+) 1464 WP_096368944.1 amino acid permease -
  QUD44_RS09600 (LFMS200408A_19080) dnaX 1917340..1919004 (-) 1665 WP_096368943.1 DNA polymerase III subunit gamma/tau -
  QUD44_RS09605 (LFMS200408A_19090) - 1919017..1919637 (-) 621 WP_096368942.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=100598 QUD44_RS09580 WP_017369521.1 1914153..1914647(-) (ssb) [Lactococcus formosensis strain MS200408A]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=100598 QUD44_RS09580 WP_017369521.1 1914153..1914647(-) (ssb) [Lactococcus formosensis strain MS200408A]
ATGATTAATAATGTTGTTTTGGTTGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTACGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAGGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
TGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGCAATTCAACACCTGATTTTGGTCGTGATGCAGATCCGTTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372

Multiple sequence alignment