Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABJ170_RS10375 Genome accession   NZ_CP157284
Coordinates   2212895..2214163 (+) Length   422 a.a.
NCBI ID   WP_348622153.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain F1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2207895..2219163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ170_RS10345 - 2208753..2209007 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  ABJ170_RS10350 - 2209235..2210008 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  ABJ170_RS10355 - 2210039..2211112 (+) 1074 WP_348622152.1 RodZ family helix-turn-helix domain-containing protein -
  ABJ170_RS10360 - 2211201..2211365 (+) 165 WP_023988236.1 hypothetical protein -
  ABJ170_RS10365 - 2211510..2212001 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  ABJ170_RS10370 pgsA 2212212..2212799 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABJ170_RS10375 cinA 2212895..2214163 (+) 1269 WP_348622153.1 competence/damage-inducible protein A Machinery gene
  ABJ170_RS10380 recA 2214405..2215466 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  ABJ170_RS10385 - 2215662..2216411 (+) 750 WP_348622154.1 RecX family transcriptional regulator -
  ABJ170_RS10390 rny 2216786..2218330 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46396.37 Da        Isoelectric Point: 4.7290

>NTDB_id=1005384 ABJ170_RS10375 WP_348622153.1 2212895..2214163(+) (cinA) [Paenibacillus polymyxa strain F1]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEQITSIPGSAAMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1005384 ABJ170_RS10375 WP_348622153.1 2212895..2214163(+) (cinA) [Paenibacillus polymyxa strain F1]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTACTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGTCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCTATGTTT
GCAAACCAGGCAAAGCCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTAATCCAATCCCAGACAGATCCTACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGTTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACAGATTACTTCTA
TACCTGGCAGTGCTGCTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAGTTACTCAACGTGCCT
TATGATTATTTGGAAGGGGACCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGATAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGCTATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTTAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

44.909

90.758

0.408

Multiple sequence alignment