Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABIS04_RS18185 Genome accession   NZ_CP157213
Coordinates   4188953..4190218 (+) Length   421 a.a.
NCBI ID   WP_350432001.1    Uniprot ID   -
Organism   Shewanella sp. H8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4183953..4195218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIS04_RS18165 (ABIS04_18150) ampD 4183970..4184524 (-) 555 WP_350431997.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABIS04_RS18170 (ABIS04_18155) nadC 4184733..4185611 (+) 879 WP_350431998.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABIS04_RS18175 (ABIS04_18160) - 4186523..4186966 (+) 444 WP_350431999.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABIS04_RS18180 (ABIS04_18165) pilB 4187052..4188758 (+) 1707 WP_350432000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABIS04_RS18185 (ABIS04_18170) pilC 4188953..4190218 (+) 1266 WP_350432001.1 type II secretion system F family protein Machinery gene
  ABIS04_RS18190 (ABIS04_18175) pilD 4190253..4191167 (+) 915 WP_350432002.1 A24 family peptidase Machinery gene
  ABIS04_RS18195 (ABIS04_18180) coaE 4191164..4191793 (+) 630 WP_350432003.1 dephospho-CoA kinase -
  ABIS04_RS18200 (ABIS04_18185) zapD 4191786..4192520 (+) 735 WP_140235345.1 cell division protein ZapD -
  ABIS04_RS18205 (ABIS04_18190) yacG 4192563..4192775 (+) 213 WP_350432004.1 DNA gyrase inhibitor YacG -
  ABIS04_RS18210 (ABIS04_18195) mutT 4192786..4193184 (+) 399 WP_350432005.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46098.28 Da        Isoelectric Point: 10.2414

>NTDB_id=1004705 ABIS04_RS18185 WP_350432001.1 4188953..4190218(+) (pilC) [Shewanella sp. H8]
MATAAKRKPKAKGKKTTKHQPKVFTYQWKGVNRDGQRSSGELKGSSIAEIRSVLKAQGVTPKGVRKKSAPLFKSEKSITA
MDIAMFTRQIATMLAAGVPLVTTLELLGRGHEKAKVRELLGTILSDVQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRVATYREKAEQLKSKIKKAMLYPIAVVIVAIAVTSLLLLFVVPQFEEIFSGFGAELPAFTQIIINISKWLQSAW
YYFAIAIIGGIWLFRRAHRKSQAFRDSVDVAILKIPLVGDILHKAAMARFARTLSTTFAAGVPLIDGLESAAGASGNYVY
RKALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKVADIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVGMYLPIFQMGNIIN

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1004705 ABIS04_RS18185 WP_350432001.1 4188953..4190218(+) (pilC) [Shewanella sp. H8]
ATGGCTACAGCAGCAAAACGCAAGCCAAAGGCGAAGGGGAAAAAAACTACCAAACACCAACCTAAGGTTTTTACCTACCA
ATGGAAGGGAGTCAATCGTGATGGCCAACGCTCCTCAGGGGAGCTAAAAGGCTCTTCTATTGCTGAAATACGCAGTGTCT
TAAAAGCCCAGGGGGTTACCCCAAAAGGCGTACGCAAGAAATCCGCACCGTTATTTAAGTCTGAAAAAAGCATCACCGCA
ATGGATATTGCGATGTTCACCCGCCAAATAGCTACAATGTTAGCGGCAGGGGTGCCATTAGTAACCACACTTGAGCTTCT
TGGTCGTGGCCATGAAAAAGCCAAAGTACGTGAATTATTAGGTACTATTTTATCCGATGTCCAATCTGGTATTCCACTTT
CTGATGCGTTAAGACCTCACCGACGTTATTTTGATGATTTATATGTTGACTTAGTTGCTGCAGGAGAGCATTCCGGTTCA
CTTGATGCGGTATTTGACCGCGTTGCAACTTACCGAGAGAAGGCCGAGCAATTAAAATCTAAAATCAAAAAAGCTATGCT
TTATCCTATAGCCGTTGTTATTGTCGCGATAGCAGTAACAAGCTTGTTATTATTATTTGTTGTACCTCAATTTGAAGAAA
TATTTAGTGGCTTTGGCGCAGAGCTACCAGCATTCACCCAAATAATTATAAATATTTCTAAATGGCTACAGAGTGCATGG
TATTACTTTGCTATCGCCATTATTGGTGGGATTTGGTTATTCCGACGTGCACATAGGAAATCTCAAGCTTTTCGAGACAG
TGTTGATGTAGCCATCCTAAAAATCCCCCTGGTAGGTGATATCCTCCACAAAGCCGCAATGGCTCGTTTTGCCCGCACTT
TATCAACCACCTTTGCAGCAGGTGTACCTTTAATTGATGGTTTAGAATCTGCTGCTGGCGCATCTGGCAACTATGTTTAT
CGTAAAGCGTTATTAAAAGTGCGCCAAGAAGTGATGTCAGGTATGCAGATGAATGTAGCCATGCGCACCACAGGGTTATT
TCCTGATATGCTCATTCAAATGGTAATGATTGGAGAAGAGTCAGGTGGTTTGGATGACATGCTTAATAAAGTGGCTGATA
TTTATGAGATGCAAGTGGATGATGCTGTTGATGGTTTATCCAGTTTAATAGAACCAATTATGATGGTCGTGATTGGTACT
TTAGTTGGTGGCTTAATCGTCGGAATGTATTTACCTATTTTCCAAATGGGTAATATAATAAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.43

93.824

0.511
  pilC Acinetobacter baylyi ADP1

49.265

96.912

0.477
  pilC Legionella pneumophila strain ERS1305867

49.752

95.962

0.477
  pilC Acinetobacter baumannii D1279779

50

94.537

0.473
  pilC Vibrio cholerae strain A1552

46.599

94.299

0.439
  pilC Vibrio campbellii strain DS40M4

43.89

95.249

0.418
  pilG Neisseria meningitidis 44/76-A

42.037

90.974

0.382
  pilG Neisseria gonorrhoeae MS11

42.037

90.974

0.382

Multiple sequence alignment