Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABIS04_RS18190 Genome accession   NZ_CP157213
Coordinates   4190253..4191167 (+) Length   304 a.a.
NCBI ID   WP_350432002.1    Uniprot ID   -
Organism   Shewanella sp. H8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4185253..4196167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIS04_RS18175 (ABIS04_18160) - 4186523..4186966 (+) 444 WP_350431999.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABIS04_RS18180 (ABIS04_18165) pilB 4187052..4188758 (+) 1707 WP_350432000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABIS04_RS18185 (ABIS04_18170) pilC 4188953..4190218 (+) 1266 WP_350432001.1 type II secretion system F family protein Machinery gene
  ABIS04_RS18190 (ABIS04_18175) pilD 4190253..4191167 (+) 915 WP_350432002.1 A24 family peptidase Machinery gene
  ABIS04_RS18195 (ABIS04_18180) coaE 4191164..4191793 (+) 630 WP_350432003.1 dephospho-CoA kinase -
  ABIS04_RS18200 (ABIS04_18185) zapD 4191786..4192520 (+) 735 WP_140235345.1 cell division protein ZapD -
  ABIS04_RS18205 (ABIS04_18190) yacG 4192563..4192775 (+) 213 WP_350432004.1 DNA gyrase inhibitor YacG -
  ABIS04_RS18210 (ABIS04_18195) mutT 4192786..4193184 (+) 399 WP_350432005.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33965.56 Da        Isoelectric Point: 8.3109

>NTDB_id=1004706 ABIS04_RS18190 WP_350432002.1 4190253..4191167(+) (pilD) [Shewanella sp. H8]
MTEFITLMAQYPWVFITISFIFAATIGSFLNVVIHRLPVMMKREWQSECNFYLNEYHPDIVKQVGNERLNKPIDQFPAKY
NIVVPGSACPKCKANIKPWHNIPILGWIMLKGKCADCKTGISIRYPIIELLTGALIATLAWHFGPTWQFVYASILTFVLV
ALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYASPEDAIIGAAAGYLSLWSIFWLFKLVTGKEGMGYGDFKLLAVFGAW
LGWQMLPLIILLSSLVGAVVGITMIIAKKLNKGNPIPFGPYIAAAGWIALVWGQDILNWYLSTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1004706 ABIS04_RS18190 WP_350432002.1 4190253..4191167(+) (pilD) [Shewanella sp. H8]
ATGACTGAATTTATCACCTTAATGGCCCAATACCCTTGGGTGTTTATCACTATTAGCTTTATTTTTGCTGCCACGATTGG
CAGCTTTCTCAACGTCGTGATCCACCGCTTGCCAGTGATGATGAAACGCGAATGGCAAAGCGAGTGTAATTTTTATTTAA
ACGAATACCATCCAGATATTGTTAAACAGGTGGGTAATGAGCGCTTAAATAAACCTATCGATCAATTCCCAGCAAAATAC
AATATTGTGGTACCAGGATCTGCATGCCCAAAATGCAAGGCCAATATAAAGCCTTGGCATAATATTCCCATACTCGGTTG
GATAATGCTTAAGGGAAAGTGTGCCGATTGTAAAACCGGTATTTCAATACGCTATCCGATTATCGAATTATTAACAGGGG
CATTAATTGCCACTTTAGCTTGGCATTTTGGCCCAACATGGCAGTTTGTGTATGCCAGTATTTTAACGTTTGTGTTAGTT
GCGTTAACAGGCATCGATTTAGATGAAATGCTATTACCGGACCAACTGACGTTACCAATATTGTGGTTAGGGTTAATTAT
TAACCTTAAAGGTATTTATGCTAGCCCTGAAGATGCCATTATTGGTGCTGCTGCAGGTTATTTAAGTTTATGGTCGATAT
TTTGGTTATTTAAACTGGTTACTGGCAAAGAAGGCATGGGCTACGGTGACTTTAAACTGTTAGCCGTATTCGGTGCTTGG
TTAGGTTGGCAAATGCTGCCATTAATTATTCTATTATCTTCACTGGTTGGTGCTGTAGTAGGTATAACGATGATTATCGC
TAAAAAACTCAATAAAGGTAATCCAATTCCTTTTGGCCCTTATATCGCTGCCGCGGGTTGGATTGCGTTAGTTTGGGGGC
AAGATATTCTTAACTGGTATCTAAGTACATTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

50.169

97.039

0.487
  pilD Vibrio cholerae strain A1552

50.169

97.039

0.487
  pilD Acinetobacter baumannii D1279779

50.345

95.395

0.48
  pilD Acinetobacter nosocomialis M2

49.306

94.737

0.467
  pilD Neisseria gonorrhoeae MS11

44.674

95.724

0.428

Multiple sequence alignment