Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAEY33_RS08860 Genome accession   NZ_CP157082
Coordinates   1810974..1812206 (+) Length   410 a.a.
NCBI ID   WP_098371375.1    Uniprot ID   -
Organism   Peribacillus simplex strain IMGN11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1805974..1817206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS08835 (AAEY33_08830) - 1807187..1807912 (+) 726 WP_098370969.1 SDR family oxidoreductase -
  AAEY33_RS08840 (AAEY33_08835) - 1807992..1808249 (+) 258 WP_076366409.1 DUF3243 domain-containing protein -
  AAEY33_RS08845 (AAEY33_08840) - 1808493..1809284 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  AAEY33_RS08850 (AAEY33_08845) - 1809293..1810201 (+) 909 WP_347941857.1 RodZ family helix-turn-helix domain-containing protein -
  AAEY33_RS08855 (AAEY33_08850) pgsA 1810367..1810951 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAEY33_RS08860 (AAEY33_08855) cinA 1810974..1812206 (+) 1233 WP_098371375.1 competence/damage-inducible protein A Machinery gene
  AAEY33_RS08865 (AAEY33_08860) recA 1812556..1813602 (+) 1047 WP_098370967.1 recombinase RecA Machinery gene
  AAEY33_RS08870 (AAEY33_08865) rny 1813956..1815515 (+) 1560 WP_063231807.1 ribonuclease Y -
  AAEY33_RS08875 (AAEY33_08870) - 1815668..1816465 (+) 798 WP_076366401.1 TIGR00282 family metallophosphoesterase -
  AAEY33_RS08880 (AAEY33_08875) spoVS 1816640..1816900 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44983.23 Da        Isoelectric Point: 4.9671

>NTDB_id=1004006 AAEY33_RS08860 WP_098371375.1 1810974..1812206(+) (cinA) [Peribacillus simplex strain IMGN11]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1004006 AAEY33_RS08860 WP_098371375.1 1810974..1812206(+) (cinA) [Peribacillus simplex strain IMGN11]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCAAGGGCGAACTTGATTGTCTTTACCGGTGGACTTGGTCCTACCAAAGATGATTTGACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGTCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGGATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGTCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGCGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCCCCACTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCATCTAAAGAAAAATGCGAAGAGCTTATATTGGAAGCGGAA
AAAGAAATTCTTAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCGATTGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCTAATGTCCTCGGCGTCAGTGATGAT
ACCATTTCCGAGTATGGGGTGGTCAGCGGTGAGTGTGCTATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGCGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCAGGCAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TATGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.578

99.512

0.583
  cinA Streptococcus pneumoniae TIGR4

45.238

100

0.463
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae Rx1

44.762

100

0.459
  cinA Streptococcus pneumoniae R6

44.762

100

0.459
  cinA Streptococcus pneumoniae D39

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38

Multiple sequence alignment