Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABHF54_RS05600 Genome accession   NZ_CP157069
Coordinates   1169263..1170483 (+) Length   406 a.a.
NCBI ID   WP_011111222.1    Uniprot ID   Q82WR6
Organism   Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164263..1175483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF54_RS05580 (ABHF54_05575) - 1165018..1166025 (+) 1008 WP_347888893.1 uroporphyrinogen-III C-methyltransferase -
  ABHF54_RS05585 (ABHF54_05580) - 1166048..1167217 (+) 1170 WP_323850402.1 heme biosynthesis protein HemY -
  ABHF54_RS05590 (ABHF54_05585) - 1167222..1168268 (-) 1047 WP_347888894.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  ABHF54_RS05595 (ABHF54_05590) - 1168298..1169209 (+) 912 WP_276679028.1 SDR family oxidoreductase -
  ABHF54_RS05600 (ABHF54_05595) pilC 1169263..1170483 (+) 1221 WP_011111222.1 type II secretion system F family protein Machinery gene
  ABHF54_RS05605 (ABHF54_05600) pilD 1170531..1171391 (+) 861 WP_324520571.1 A24 family peptidase Machinery gene
  ABHF54_RS05610 (ABHF54_05605) coaE 1171394..1172005 (+) 612 WP_347888895.1 dephospho-CoA kinase -
  ABHF54_RS05615 (ABHF54_05610) zapD 1172079..1172834 (+) 756 WP_041357059.1 cell division protein ZapD -
  ABHF54_RS05620 (ABHF54_05615) - 1172851..1173045 (+) 195 WP_074671117.1 DNA gyrase inhibitor YacG -
  ABHF54_RS05625 (ABHF54_05620) lplT 1173160..1174425 (-) 1266 WP_347888896.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44054.87 Da        Isoelectric Point: 9.5521

>NTDB_id=1003937 ABHF54_RS05600 WP_011111222.1 1169263..1170483(+) (pilC) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
MATVAASEKKIKEFNFLWEGKDKAGKAVKGEMRAAGTVVVTSTLRRQGIRVTKITKARAGGKITDKDITLFTRQLATMMK
SGVPLLQAFDIVGKGHSNRAVGKLLMDIKSDVETGNSLANAFRKHPLYFDSLFCNLVAAGEAAGILDSLLDRLATYKEKI
QAIKGKIKSALFYPISIIVVAFVITAVIMIFVIPAFKELFQGFGADLPAPTLMVMAISDFFVDYWWAIFGCVGGGLYAFF
YTWKRSTVMQHVMDRLALRLPIFGEVIRKATIARWSRTLSTMFAAGVPLVEALNSVAGAAGNQVYFEATRNIQNEVSTGS
SLVDAMTATNVFPSMVLQMVSIGEESGSLDAMLSKIADFFEAEVDDAVEALSSLMEPIIMVVLGTLIGGMVVAMYLPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1003937 ABHF54_RS05600 WP_011111222.1 1169263..1170483(+) (pilC) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
ATGGCGACAGTTGCTGCATCAGAAAAGAAAATCAAGGAGTTCAATTTTCTGTGGGAAGGAAAGGATAAGGCTGGCAAGGC
AGTCAAAGGTGAGATGCGTGCTGCCGGTACTGTTGTGGTGACTTCCACACTGCGCCGCCAGGGTATCAGGGTGACGAAAA
TCACCAAAGCCAGAGCTGGTGGAAAAATAACGGATAAGGACATAACGCTGTTTACACGCCAGCTTGCGACGATGATGAAA
TCAGGGGTGCCTTTGCTGCAAGCATTTGATATCGTGGGTAAGGGACACAGCAACCGTGCCGTGGGAAAACTGCTGATGGA
CATCAAGTCCGATGTGGAAACAGGTAACAGTCTGGCCAATGCCTTCAGAAAACATCCGCTTTATTTCGATTCCCTGTTCT
GTAATCTGGTGGCCGCCGGAGAGGCCGCCGGTATTCTGGACAGCTTGCTGGACAGGCTGGCTACCTATAAGGAAAAGATT
CAGGCCATCAAGGGAAAAATCAAATCGGCTCTGTTTTACCCCATTTCGATAATCGTGGTTGCATTCGTCATTACCGCAGT
GATCATGATATTCGTGATTCCAGCCTTCAAAGAGCTTTTCCAGGGATTTGGTGCCGATCTGCCTGCCCCCACTCTGATGG
TGATGGCGATTTCTGATTTCTTCGTGGATTACTGGTGGGCAATTTTTGGGTGCGTCGGTGGCGGGCTGTACGCATTCTTC
TATACATGGAAGCGCTCTACGGTGATGCAGCATGTGATGGATCGACTAGCGCTGAGGTTGCCGATATTTGGAGAAGTAAT
TCGTAAAGCCACTATCGCCCGCTGGTCTCGCACGCTTTCAACTATGTTTGCTGCGGGTGTCCCTCTGGTCGAAGCGCTCA
ATTCCGTGGCCGGTGCGGCCGGAAATCAGGTGTATTTCGAAGCTACCAGGAATATACAGAATGAAGTCAGCACGGGCAGC
AGTCTGGTAGATGCCATGACAGCCACCAATGTGTTTCCTTCCATGGTGTTGCAGATGGTTTCCATCGGTGAGGAATCAGG
CTCGCTCGATGCCATGCTCAGCAAAATTGCAGATTTTTTCGAGGCAGAAGTGGATGATGCGGTGGAAGCACTCTCCAGTC
TGATGGAGCCGATCATCATGGTTGTGCTGGGGACGCTCATTGGTGGAATGGTTGTTGCCATGTACCTGCCCATCTTTAAA
ATGGGTCAGGTCGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q82WR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.025

98.03

0.539
  pilG Neisseria gonorrhoeae MS11

54.156

97.783

0.53
  pilG Neisseria meningitidis 44/76-A

53.904

97.783

0.527
  pilC Pseudomonas stutzeri DSM 10701

51.485

99.507

0.512
  pilC Acinetobacter baylyi ADP1

50.882

97.783

0.498
  pilC Acinetobacter baumannii D1279779

50.754

98.03

0.498
  pilC Vibrio cholerae strain A1552

41.791

99.015

0.414
  pilC Vibrio campbellii strain DS40M4

39.183

100

0.401

Multiple sequence alignment