Detailed information NTG1003938

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABHF54_RS05605
• Genome accession: NZ_CP157069
• Coordinates: 1170531..1171391 (+)
• Length: 286 a.a.
• NCBI ID: WP_324520571.1
• Uniprot ID: -
• Organism: Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1165531..1176391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHF54_RS05585 (ABHF54_05580)	-	1166048..1167217 (+)	1170	WP_323850402.1	heme biosynthesis protein HemY	-
ABHF54_RS05590 (ABHF54_05585)	-	1167222..1168268 (-)	1047	WP_347888894.1	CDP-6-deoxy-delta-3,4-glucoseen reductase	-
ABHF54_RS05595 (ABHF54_05590)	-	1168298..1169209 (+)	912	WP_276679028.1	SDR family oxidoreductase	-
ABHF54_RS05600 (ABHF54_05595)	pilC	1169263..1170483 (+)	1221	WP_011111222.1	type II secretion system F family protein	Machinery gene
ABHF54_RS05605 (ABHF54_05600)	pilD	1170531..1171391 (+)	861	WP_324520571.1	A24 family peptidase	Machinery gene
ABHF54_RS05610 (ABHF54_05605)	coaE	1171394..1172005 (+)	612	WP_347888895.1	dephospho-CoA kinase	-
ABHF54_RS05615 (ABHF54_05610)	zapD	1172079..1172834 (+)	756	WP_041357059.1	cell division protein ZapD	-
ABHF54_RS05620 (ABHF54_05615)	-	1172851..1173045 (+)	195	WP_074671117.1	DNA gyrase inhibitor YacG	-
ABHF54_RS05625 (ABHF54_05620)	lplT	1173160..1174425 (-)	1266	WP_347888896.1	lysophospholipid transporter LplT	-
ABHF54_RS05630 (ABHF54_05625)	nhaC	1174652..1176085 (+)	1434	WP_347888897.1	Na+/H+ antiporter NhaC	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31249.04 Da
• Isoelectric Point: 7.6852

>NTDB_id=1003938 ABHF54_RS05605 WP_324520571.1 1170531..1171391(+) (pilD) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
MNFLDTLQASSLFFVSFISIIGLLLGSFLNVVIYRLPEMLKREWQQQCAELRGEQIKALPAYNLAIPGSGCPQCGHKISI
LENIPIISYLFLRGQCSGCHTRIPFSYPLVEALTAILSGLAAWHFGFGGLLFAVLVFVWAMIVLTFIDLNTQLLPDSITQ
PLLWTGLIVNLNNGFTDVHSAVVGAVAGYLTLWSVYWLFRLLTGKEGMGYGDFKLLAAIGAWLGWQLLPLVILFSSVVGA
VVGTVLILSAGHSKNMTLPFGPYLAGGGLIALFWGKQINQAYLAMF

Nucleotide

• Length: 861 bp

>NTDB_id=1003938 ABHF54_RS05605 WP_324520571.1 1170531..1171391(+) (pilD) [Nitrosomonas europaea strain CCTCC M 2024693 isolate miaainf]
ATGAATTTTCTTGATACCCTGCAGGCTTCATCTCTTTTTTTCGTTTCGTTCATCTCGATAATCGGCCTGCTTCTGGGCAG
TTTCCTGAATGTAGTGATTTATCGGCTGCCCGAGATGCTGAAACGTGAGTGGCAGCAACAGTGTGCAGAGCTGCGCGGGG
AACAGATAAAAGCACTGCCGGCATATAACCTGGCTATACCGGGATCCGGTTGTCCGCAGTGTGGGCATAAAATTTCCATT
CTTGAAAATATCCCGATCATCAGTTATCTTTTTTTGCGAGGACAGTGTTCCGGTTGCCATACGCGCATTCCGTTCAGCTA
TCCTCTGGTCGAGGCGCTGACGGCCATTCTGAGCGGTCTGGCCGCTTGGCATTTTGGTTTCGGTGGCCTTCTGTTTGCTG
TCCTGGTTTTTGTGTGGGCGATGATCGTTCTGACCTTTATCGACCTGAATACTCAGCTTTTACCGGACAGTATCACCCAG
CCGTTATTGTGGACAGGGTTGATCGTCAATCTGAACAACGGTTTTACCGATGTTCATTCGGCTGTGGTCGGTGCGGTTGC
AGGTTATCTCACGCTCTGGAGTGTTTACTGGCTGTTCAGATTGCTGACCGGCAAGGAAGGCATGGGATACGGTGATTTCA
AGCTGCTGGCTGCAATCGGTGCCTGGCTGGGCTGGCAATTGCTGCCACTGGTCATTCTGTTTTCTTCTGTGGTGGGTGCC
GTCGTTGGTACTGTTCTGATTCTATCTGCCGGCCATTCGAAAAACATGACACTTCCCTTTGGCCCTTATCTGGCTGGCGG
CGGGCTGATCGCCCTGTTCTGGGGTAAGCAGATCAATCAGGCTTACCTTGCCATGTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.704	99.301	0.503
pilD	Vibrio cholerae strain A1552	51.648	95.455	0.493
pilD	Neisseria gonorrhoeae MS11	46.691	95.105	0.444
pilD	Acinetobacter baumannii D1279779	45.896	93.706	0.43
pilD	Acinetobacter nosocomialis M2	45.896	93.706	0.43