Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEF88_RS01640 Genome accession   NZ_CP156804
Coordinates   339927..341156 (-) Length   409 a.a.
NCBI ID   WP_347453471.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334927..346156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01615 (ABEF88_01615) - 336259..336582 (+) 324 WP_034587531.1 pyrimidine/purine nucleoside phosphorylase -
  ABEF88_RS01620 (ABEF88_01620) rlmB 336735..337484 (+) 750 WP_347453467.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEF88_RS01625 (ABEF88_01625) - 337521..338441 (+) 921 WP_347453468.1 DMT family transporter -
  ABEF88_RS01630 (ABEF88_01630) coaE 338466..339065 (-) 600 WP_347453469.1 dephospho-CoA kinase -
  ABEF88_RS01635 (ABEF88_01635) pilD 339067..339927 (-) 861 WP_347453470.1 A24 family peptidase Machinery gene
  ABEF88_RS01640 (ABEF88_01640) pilC 339927..341156 (-) 1230 WP_347453471.1 type II secretion system F family protein Machinery gene
  ABEF88_RS01645 (ABEF88_01645) pilB 341188..342897 (-) 1710 WP_347453472.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEF88_RS01650 (ABEF88_01650) tpiA 343181..343972 (+) 792 WP_347453473.1 triose-phosphate isomerase -
  ABEF88_RS01655 (ABEF88_01655) secG 343986..344315 (+) 330 WP_347453474.1 preprotein translocase subunit SecG -
  ABEF88_RS01685 (ABEF88_01685) rimP 345266..345790 (+) 525 WP_034587514.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45158.75 Da        Isoelectric Point: 9.9407

>NTDB_id=1002956 ABEF88_RS01640 WP_347453471.1 339927..341156(-) (pilC) [Acinetobacter thermotolerans strain ANC 7881]
MASVKKGQMMPTFLYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKRVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAVY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWMQKYWFLLIIFIGIVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1002956 ABEF88_RS01640 WP_347453471.1 339927..341156(-) (pilC) [Acinetobacter thermotolerans strain ANC 7881]
ATGGCTTCAGTGAAAAAAGGTCAGATGATGCCAACCTTCCTTTATGAAGGGGTAGACCGCAAAGGGGTTAAAATTAAAGG
TGAAATGCCAGCACGCAACCTGGCTTTGGCCAAGGTGACACTGCGTAAGCAAGGCATCAGCATTAAGAGTATTCGAGAGA
AAAAGAAGAATATTCTTGAAGGTTTGATGAAAAAAAGAGTCACCACACTGGATATCACTATTTTTACTCGTCAGCTAGCA
ACCATGATGAAAGCCGGTGTACCGCTGGTACAAGGTTTTGAAATCGTCGCTGAAGGTCTGGAAAATCCAGCCATGCGTGA
AGTGGTACTTGGAATTAAAGGTGAAGTTGAAGGGGGTAATACTTTTGCGGGAGCATTACGTAAATACCCGCAATATTTTG
ACAAGTTGTTCTGCTCTCTAGTTGAATCCGGTGAACAGTCCGGTGCGCTAGAAACCATGCTGGATCGGGTTGCAGTCTAT
AAAGAAAAGAGTGAACTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCGGCGACCGTTATTGTGGTGGCGGTTAT
CGTCACTATTATTCTAATGGTTAAAGTCGTTCCGGTATTTGAAGAGCTATTCACTTCTTTTGGTGCTGACCTACCCGCTT
TCACTAAGATGGTCGTGAATATGTCACAATGGATGCAGAAATACTGGTTCCTGTTAATTATCTTTATCGGTATTGTGATT
ACAGCTTTTCTGGAAGCCAAAAAACGCAGCAAAAAATTCCGTGATTTTCTGGATAAAGCAGCACTCAAAGCCCCAATCTT
TGGTGATCTGGTCTACAAGGCAATTATTGCCCGTTACAGTCGTACTTTGGCTACTACATTTGCTGCTGGTGTACCATTGA
TTGATGCACTGGAATCTACTGCTGGTGCAACCAATAACGTAGTCTATGAAGAAGCGGTAATGAAAATCCGTGAAGATGTC
GCAACCGGTCAGCAACTACAATTCGCTATGCGCGTTACCAATAAATTCCCTTCTATGGCAGTACAGATGGTTTCAATCGG
TGAAGAATCTGGTGCGCTAGATGCCATGTTGGATAAAGTCGCGACTCACTATGAAAACGAAGTCGATAATGCTGTCGATG
GTTTAACTTCGATGATGGAACCTTTAATTATGGCCATTCTTGGTGTTCTAGTAGGTGGCTTGGTTATCGCCATGTATCTA
CCAATCTTCCAGATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.189

99.511

0.888
  pilC Acinetobacter baylyi ADP1

82.801

99.511

0.824
  pilC Pseudomonas stutzeri DSM 10701

60.804

97.311

0.592
  pilC Legionella pneumophila strain ERS1305867

53.769

97.311

0.523
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

43.137

99.756

0.43
  pilC Vibrio campbellii strain DS40M4

41.975

99.022

0.416
  pilC Thermus thermophilus HB27

37.531

99.022

0.372

Multiple sequence alignment