Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF85_RS13555 Genome accession   NZ_CP156776
Coordinates   2780451..2782616 (-) Length   721 a.a.
NCBI ID   WP_347463951.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2775451..2787616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13540 (ABEF85_13540) - 2777905..2778756 (-) 852 WP_347454499.1 hypothetical protein -
  ABEF85_RS13545 (ABEF85_13545) aroB 2778770..2779849 (-) 1080 WP_347456725.1 3-dehydroquinate synthase -
  ABEF85_RS13550 (ABEF85_13550) aroK 2779878..2780414 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF85_RS13555 (ABEF85_13555) pilQ 2780451..2782616 (-) 2166 WP_347463951.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF85_RS13560 (ABEF85_13560) pilP 2782633..2783160 (-) 528 WP_347463953.1 pilus assembly protein PilP Machinery gene
  ABEF85_RS13565 (ABEF85_13565) pilO 2783160..2783915 (-) 756 WP_404798872.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF85_RS13570 (ABEF85_13570) pilN 2783912..2784556 (-) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF85_RS13575 (ABEF85_13575) pilM 2784556..2785614 (-) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78792.31 Da        Isoelectric Point: 5.3750

>NTDB_id=1002644 ABEF85_RS13555 WP_347463951.1 2780451..2782616(-) (pilQ) [Acinetobacter thermotolerans strain ANC 7955]
MNKSFKEFIFGDGNTMNHVFRQFSMGAVAIAVMQAASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQMESPSRLI
LDFEQAKQNLKQGNIPVATKEASSVDVSSDAQRARLTVNLADAGAFTTRVEGNTFILKINSNSPVATVQPVVQQAAQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTVSLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVAEMIKAEEEEAKALAQSVKLAPIQTEYIQLNYAKAADIEKLITQNKGASNT
GSSNSSNNNDKESLLSSRGSVSIDARTNTIIINDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGVL
SQGITNNNHLLVGGSDTTLWNLREPERNDELGGYTYEIERPQNLNVDLGVTNAAGKIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVESGFEVPYQSSEGGGINAVAKTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVTPM
GEYYLNKNKLNTNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=1002644 ABEF85_RS13555 WP_347463951.1 2780451..2782616(-) (pilQ) [Acinetobacter thermotolerans strain ANC 7955]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
AGTTGCGATTGCAGTGATGCAGGCAGCAAGTGCACAAATCGCAATTACTAATGTGGTGCCAATGCAGGTTCCAGGACAAG
GGACTGAAATTCGTGTGATGTTCAATGGCTTGCCACCACAGCCACAAGCCTATCAGATGGAATCTCCATCACGTTTGATT
CTGGATTTTGAACAGGCAAAGCAGAATCTGAAACAAGGTAATATTCCTGTTGCAACAAAAGAAGCAAGTTCTGTTGATGT
ATCTTCAGACGCACAACGTGCACGTTTAACCGTGAATCTGGCGGATGCGGGTGCATTTACTACACGTGTCGAAGGCAACA
CCTTTATTTTAAAAATCAATTCTAATAGCCCAGTGGCTACTGTTCAGCCAGTAGTTCAACAGGCTGCTCAAGGAATTACC
AATATTGGTTTCCAGCGTGGTGCTAAAGGTGAAGGACAAGTCGTCATTGACCTAGCGAGTGGAAATACACCAGTTGATGT
ACAGCAACAAGGTACTAAGATTGTGGTTCGTGCACTGGGTAGTAAAATCCCTGCCCACCTTACTCGTCGTCTGAATGTGA
ATGATTTCGCGACACCAGTTTCTACTGTGGATGCAGTCAACCAGAATGGTTCAGGCGTGATTACCATTCAGACTTCGGAT
AGCTATGAATATATGGCTTATCAAACCGATAATAAACTGACAGTTAGTCTGAAACGTCCAGAAGAGAAAAATCCACTACG
TCCTAAAGCAGCACATCATTATACTGGCAAGAAAATCTCTCTAGATTTTCAGGATATTGAAGTTCGCCGTGTATTGCAGT
TGTTAGCGGACTTTACTGATATCAATATGGTGGCAGCGGATAGTGTACAAGGGAATATTACTTTACGTCTCAAGGAAGTT
CCTTGGGATCAAGCGCTGGATATCGTTTTAAAGACCAAAAATCTGGATAAACGCCGTAATGGTAACGTGATCTGGATTGC
ACCAGTTGCTGAAATGATAAAAGCGGAAGAAGAAGAGGCAAAAGCATTAGCTCAAAGTGTAAAGTTGGCTCCAATTCAGA
CTGAATATATCCAATTAAATTATGCGAAAGCTGCTGATATAGAAAAACTGATTACCCAAAATAAAGGTGCTTCAAATACT
GGTAGTTCGAACTCAAGCAACAATAATGATAAAGAAAGTTTGCTAAGTTCCCGCGGTTCGGTCTCTATTGATGCACGTAC
TAATACGATAATTATTAATGATACTCAGCCATTTATTGATAAAATTCGTAATATGGTTGATCTGCTAGATGTACAGGTTA
AGCAGGTGATGGTGGAAGCACGTATTGTGCGCGCATCTACAGAATTTACAAAAGAGATTGGCGTAAAATGGGGTGTCTTG
TCTCAAGGGATCACCAATAATAATCATCTTTTAGTCGGTGGTAGTGATACAACTTTATGGAATTTACGTGAGCCTGAGAG
GAATGATGAATTAGGTGGTTATACCTATGAAATTGAGCGACCGCAAAACCTGAATGTTGATTTAGGTGTAACGAATGCTG
CCGGTAAAATTGCTTTTGGTTTAATTAGTCTCTCGGATTTTATGTTGGATCTTGAACTTTCTGCATTACAGGCCGATGGT
TATGGAGAGGTAATTTCAACACCTAAAGTTTTGACCGCTGACAAGCAAAAAGCCACTGTAGAATCTGGTTTTGAAGTGCC
ATATCAATCATCTGAAGGTGGTGGTATAAATGCTGTAGCTAAAACTGAATTCAAGGACGTGGTGCTTAAGCTGGATGTGA
CACCAAGTATTACGCCGGACGGAAAAGTGCAAATGGATCTGGATATTTCGAGTGATAGTATTGCCGGGGTAACACCAATG
GGTGAATACTACTTGAACAAGAACAAGTTAAATACCAATGTTCTAGTTGAAAATGGTGAAACCGTCGTGCTCGGTGGTAT
TTTTGAACAGGAAACCCTGAATCAGCAAACGAAAGTGCCTTTCTTAGGAGATATTCCATATCTAGGCCGTTTATTCCGTA
AGGATGCAAAATCGGATAATAAACGTGAGCTCCTGATTTTTGTTACCCCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(54-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.167

100

0.734
  pilQ Acinetobacter baumannii strain A118

73.029

100

0.732
  comQ Acinetobacter baylyi ADP1

69.167

99.861

0.691
  pilQ Pseudomonas aeruginosa PAK

41.547

96.81

0.402
  pilQ Legionella pneumophila strain Lp02

38.473

96.255

0.37
  pilQ Legionella pneumophila strain ERS1305867

38.473

96.255

0.37

Multiple sequence alignment