Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABEF85_RS13570 Genome accession   NZ_CP156776
Coordinates   2783912..2784556 (-) Length   214 a.a.
NCBI ID   WP_347453499.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2778912..2789556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13550 (ABEF85_13550) aroK 2779878..2780414 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF85_RS13555 (ABEF85_13555) pilQ 2780451..2782616 (-) 2166 WP_347463951.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF85_RS13560 (ABEF85_13560) pilP 2782633..2783160 (-) 528 WP_347463953.1 pilus assembly protein PilP Machinery gene
  ABEF85_RS13565 (ABEF85_13565) pilO 2783160..2783915 (-) 756 WP_404798872.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF85_RS13570 (ABEF85_13570) pilN 2783912..2784556 (-) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF85_RS13575 (ABEF85_13575) pilM 2784556..2785614 (-) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF85_RS13580 (ABEF85_13580) ponA 2785781..2788312 (+) 2532 WP_347463955.1 penicillin-binding protein PBP1a -
  ABEF85_RS13585 (ABEF85_13585) - 2788357..2789382 (-) 1026 WP_347452896.1 transposase domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23990.23 Da        Isoelectric Point: 4.7839

>NTDB_id=1002647 ABEF85_RS13570 WP_347453499.1 2783912..2784556(-) (pilN) [Acinetobacter thermotolerans strain ANC 7955]
MAKINLLPWRDELRVKRNNEFIAYCVGALLLGVTAAGGGWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLDGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYVTKFVRTGDKFTIEGKAASPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKAPSSLIPRIEESYGTFTVTVDLDQIAQPVLSEQQPQAAETTTQGATS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1002647 ABEF85_RS13570 WP_347453499.1 2783912..2784556(-) (pilN) [Acinetobacter thermotolerans strain ANC 7955]
ATGGCAAAAATTAACCTATTGCCTTGGCGTGATGAGCTAAGAGTCAAAAGAAATAATGAATTTATCGCATATTGCGTAGG
GGCTTTGTTGCTCGGTGTAACAGCAGCAGGGGGCGGCTGGTTCTATTACGATCAAAAATTACAGGATCAGGAACAGGCCA
ATCAACTTATCATTAGTACCAACCAGAATCTGGATGTGCAGCTGAAATCACTCGATGGTTTGCAAGAGCAGCGTGATGCG
ATTGTCGAGCGTATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATCTGATTGATGAAATTGTGCG
GGTAACGCCAAGTGATATGTATGTCACCAAGTTTGTACGTACCGGGGATAAGTTCACGATTGAAGGCAAGGCTGCAAGTC
CAAATACCGTGGCAGAGTTGCTTCGTAATTTGGAAGCCTCTCCTTGGTATCGCAATGCATTTATGAATTCGTTCCTGGCA
GCGGAAGAGAAGAAGGACAAAGCACCAAGTTCTCTGATTCCGCGTATTGAAGAGTCTTATGGAACGTTCACAGTAACTGT
TGATCTTGACCAGATTGCTCAGCCTGTGCTTTCCGAGCAGCAACCACAGGCAGCTGAGACAACTACACAGGGGGCGACAT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.648

90.187

0.682
  comN Acinetobacter baylyi ADP1

69.565

96.729

0.673

Multiple sequence alignment