Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   EL230_RS08425 Genome accession   NZ_LR134490
Coordinates   1669340..1670716 (-) Length   458 a.a.
NCBI ID   WP_005668320.1    Uniprot ID   A0ABY1VUX8
Organism   Haemophilus influenzae strain NCTC11873     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664340..1675716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL230_RS08410 (NCTC11873_01689) lolA 1665376..1665993 (-) 618 WP_005647249.1 outer membrane lipoprotein chaperone LolA -
  EL230_RS08415 (NCTC11873_01690) - 1666011..1668779 (-) 2769 WP_005668317.1 DNA translocase FtsK -
  EL230_RS08420 (NCTC11873_01691) lrp 1668781..1669260 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -
  EL230_RS08425 (NCTC11873_01692) radA/sms 1669340..1670716 (-) 1377 WP_005668320.1 DNA repair protein RadA Machinery gene
  EL230_RS08430 (NCTC11873_01693) - 1670852..1671898 (-) 1047 WP_044509535.1 CYTH domain-containing protein -
  EL230_RS08435 (NCTC11873_01694) - 1672222..1672938 (-) 717 WP_005653246.1 DUF2063 domain-containing protein -
  EL230_RS08440 (NCTC11873_01695) - 1672928..1673851 (-) 924 WP_005647267.1 DUF692 domain-containing protein -
  EL230_RS08445 (NCTC11873_01696) - 1673911..1674198 (-) 288 WP_005647268.1 hypothetical protein -
  EL230_RS08450 (NCTC11873_01697) - 1674237..1674677 (-) 441 WP_005647269.1 DoxX family protein -
  EL230_RS08455 (NCTC11873_01698) - 1674900..1675580 (+) 681 WP_005647270.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49425.01 Da        Isoelectric Point: 8.1109

>NTDB_id=1002647 EL230_RS08425 WP_005668320.1 1669340..1670716(-) (radA/sms) [Haemophilus influenzae strain NCTC11873]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFN
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLPNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1002647 EL230_RS08425 WP_005668320.1 1669340..1670716(-) (radA/sms) [Haemophilus influenzae strain NCTC11873]
ATGGCTAAAGCCCCGAAAACAGCTTATGTATGTAACGATTGTGGTGCGGAGTTTTCTCGTTGGCAAGGGCAATGTTCCGC
TTGTAAAGCGTGGAATACAATCACGGAAGTGCGGTTAATTTCCACGGCAAAATCAAAAAATGATCGTTTTAGTGGCTATG
CGGGGGAAACTCAGGCAAAAATTCAAACGCTCTCTGAAATTAGTTTGCAAGAAACGCCTCGTTTTTCCAGTGGTTTTAAT
GAATTGGATCGTGTACTTGGTGGCGGGATCGTACCGGGTAGTGCGATTTTAATTGGAGGGCATCCTGGAGCAGGGAAAAG
TACATTGTTACTACAGGTTATGTGTGGTTTGGCAAAAAATATGACCGCACTTTATGTAACGGGAGAGGAATCATTACAAC
AGGTTGCGATGCGCGCAAGCCGATTGGGATTGCCAAATGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTGGCGGATCAATTAAAACCGCAAATTATCGTGGTGGATTCTATCCAAGTAATGCATTTGGCAGATATTCAATC
ATCGCCAGGCAGTGTAGCTCAAGTGCGTGAATGCGCTTCTTTCCTCACTCGTTATGCGAAAACTCGCCAAGTGGCGATTA
TTATGGTTGGACACGTTACGAAAGACGGAACCCTTGCAGGGCCTAAAGTGTTAGAGCATGCCATTGACTGTTCATTGTTA
TTAGAAGGCGAAGCCGATTCTCGTTATCGTACTTTGCGTAGTCATAAAAACCGTTTTGGTGCAGTAAATGAATTAGGTGT
ATTTGGAATGACAGAGCAGGGTTTGCGCGAAGTGAAAAATCCATCGGCGATCTTTTTAAGTCGTGGTGATGAGATTACAT
CGGGCAGTTCTGTTATGGTACTTTGGGAGGGTACTCGTCCTCTTTTAGTGGAAATTCAAGCCTTGGTGGATCATTCAATG
CTGGCAAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGCTTAGCTCTATTATTGGCGGTGTTACATCGACATGG
TGGCTTACAAATGGCGGATCAAGATGTTTTTGTAAATGTGGTTGGTGGTGTAAAAGTCAGTGAAACCAGTGCGGATTTAG
CTTTGTTGCTTGCGTTAATTTCAAGTTTCCGTAATCGCCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAGGAACGTATTAGCGAGGCTGCAAAACACGGTTTTAAACGTGCTATTGT
TCCTTTTGGTAACAAGCCGAAAAGTGCGGTCGAAAATATGCAGGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.623

100

0.467
  radA Streptococcus mitis NCTC 12261

43.267

98.908

0.428
  radA Streptococcus mitis SK321

43.267

98.908

0.428
  radA Streptococcus pneumoniae TIGR4

44.755

93.668

0.419
  radA Streptococcus pneumoniae D39

44.755

93.668

0.419
  radA Streptococcus pneumoniae Rx1

44.755

93.668

0.419
  radA Streptococcus pneumoniae R6

44.755

93.668

0.419

Multiple sequence alignment