Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EL133_RS09945 Genome accession   NZ_LR134323
Coordinates   1932723..1933121 (-) Length   132 a.a.
NCBI ID   WP_006738748.1    Uniprot ID   G5KEE4
Organism   Streptococcus urinalis strain NCTC13766     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1927723..1938121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS09920 (NCTC13766_02042) - 1927966..1928610 (+) 645 WP_006738639.1 deoxynucleoside kinase -
  EL133_RS09925 (NCTC13766_02043) - 1928643..1929446 (-) 804 WP_006739120.1 ABC transporter ATP-binding protein -
  EL133_RS09930 (NCTC13766_02044) - 1929456..1930340 (-) 885 WP_006739537.1 ABC transporter permease -
  EL133_RS09935 (NCTC13766_02045) - 1930352..1931326 (-) 975 WP_006739500.1 ABC transporter substrate-binding protein -
  EL133_RS09940 (NCTC13766_02046) - 1931349..1932311 (-) 963 WP_006740141.1 ABC transporter substrate-binding protein -
  EL133_RS09945 (NCTC13766_02047) ssbB/cilA 1932723..1933121 (-) 399 WP_006738748.1 single-stranded DNA-binding protein Machinery gene
  EL133_RS09950 (NCTC13766_02049) - 1933386..1933667 (-) 282 WP_050934194.1 DUF5960 family protein -
  EL133_RS09955 (NCTC13766_02050) - 1933719..1934786 (-) 1068 WP_006738696.1 SH3 domain-containing protein -
  EL133_RS09960 (NCTC13766_02051) - 1934796..1935134 (-) 339 WP_006739223.1 phage holin -
  EL133_RS09965 (NCTC13766_02052) - 1935136..1935459 (-) 324 WP_006738968.1 hypothetical protein -
  EL133_RS09970 (NCTC13766_02053) - 1935463..1935615 (-) 153 WP_006740385.1 hypothetical protein -
  EL133_RS09975 (NCTC13766_02054) - 1935678..1936073 (-) 396 WP_006740170.1 DUF1366 domain-containing protein -
  EL133_RS11735 (NCTC13766_02055) - 1936075..1936209 (-) 135 WP_006738497.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15219.29 Da        Isoelectric Point: 7.1070

>NTDB_id=1001708 EL133_RS09945 WP_006738748.1 1932723..1933121(-) (ssbB/cilA) [Streptococcus urinalis strain NCTC13766]
MYQVNTILIGRLTAQPELIKTTNDKSFCRATIAVNRRYKTKTGEKETDFINLVVWGKLAETLVSYANKGSLLSCDGELRT
RKYEKENQTHYISEVLCHSFQLLESRTQRAMRENNNISDLADLVLDDQELPF

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1001708 EL133_RS09945 WP_006738748.1 1932723..1933121(-) (ssbB/cilA) [Streptococcus urinalis strain NCTC13766]
ATGTATCAAGTGAATACCATATTAATTGGACGACTAACAGCTCAACCTGAGCTAATTAAAACGACAAATGACAAATCATT
TTGTCGTGCGACAATTGCAGTCAATAGAAGATATAAAACAAAAACTGGTGAAAAAGAGACTGATTTTATCAATCTTGTTG
TTTGGGGTAAGTTAGCGGAAACTTTAGTCTCATATGCAAATAAAGGTAGCCTTTTATCATGCGATGGAGAATTAAGGACA
CGAAAATATGAAAAAGAAAATCAGACACATTATATTTCAGAAGTCCTTTGCCATTCTTTTCAATTATTAGAATCACGTAC
TCAAAGAGCAATGCGTGAAAATAATAATATCAGTGATTTAGCCGATTTGGTTCTTGATGACCAAGAGTTACCTTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KEE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

68.939

100

0.689
  ssbB/cilA Streptococcus mitis SK321

68.939

100

0.689
  ssbB/cilA Streptococcus mitis NCTC 12261

68.182

100

0.682
  ssbA Streptococcus mutans UA159

66.667

100

0.667
  ssbB/cilA Streptococcus pneumoniae Rx1

69.841

95.455

0.667
  ssbB/cilA Streptococcus pneumoniae D39

69.841

95.455

0.667
  ssbB/cilA Streptococcus pneumoniae R6

69.841

95.455

0.667
  ssbB Streptococcus sobrinus strain NIDR 6715-7

65.909

100

0.659
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.333

0.508