Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU15_RS05320 Genome accession   NZ_CP155992
Coordinates   1244377..1245636 (-) Length   419 a.a.
NCBI ID   WP_012437601.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain LMG 08001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239377..1250636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU15_RS05290 (ABFU15_05290) - 1239607..1240941 (+) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  ABFU15_RS05295 (ABFU15_05295) - 1241084..1241575 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  ABFU15_RS05300 (ABFU15_05300) - 1241572..1241862 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  ABFU15_RS05305 (ABFU15_05305) - 1241937..1242338 (-) 402 WP_012437599.1 SymE family type I addiction module toxin -
  ABFU15_RS05310 (ABFU15_05310) coaE 1242870..1243493 (-) 624 WP_011038217.1 dephospho-CoA kinase -
  ABFU15_RS05315 (ABFU15_05315) - 1243507..1244370 (-) 864 WP_012437600.1 A24 family peptidase -
  ABFU15_RS05320 (ABFU15_05320) pilC 1244377..1245636 (-) 1260 WP_012437601.1 type II secretion system F family protein Machinery gene
  ABFU15_RS05325 (ABFU15_05325) comP 1245988..1246401 (+) 414 WP_012437602.1 pilin Machinery gene
  ABFU15_RS05330 (ABFU15_05330) - 1246620..1248131 (+) 1512 WP_256729490.1 phosphoethanolamine transferase -
  ABFU15_RS05335 (ABFU15_05335) - 1248142..1248771 (+) 630 WP_012437604.1 hypothetical protein -
  ABFU15_RS05340 (ABFU15_05340) - 1248741..1250267 (+) 1527 WP_016944997.1 membrane protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45885.30 Da        Isoelectric Point: 10.1819

>NTDB_id=1000862 ABFU15_RS05320 WP_012437601.1 1244377..1245636(-) (pilC) [Xanthomonas campestris pv. campestris strain LMG 08001]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSVVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISAHPVQFDELYRNLVRAGEGAGVLE
TVLDTVASYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKGFGAELPAFTQLLVNASRFMVSYWWL
MLVVAVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1000862 ABFU15_RS05320 WP_012437601.1 1244377..1245636(-) (pilC) [Xanthomonas campestris pv. campestris strain LMG 08001]
ATGTCAGTCGCGCGCAGCGCCATCAAGAAGCAACCAGTAGACCGGAACACCAGCATGCTGCAGACCTTCATCTGGGAAGG
GGCTGACAAGCGTGGTGTGAAGATGAAGGGAGAGCAGACAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATTGTGCCCAGCGTGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATCACCCCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCTTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGACATCGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCGCACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGACACGGTCGCTTCCTACAAAGAGAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAGGTCTTCA
AGGGTTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTAGTAGCGGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACAACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTAGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
TATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAAGAGGTCAATAATGCCGTGGACGCACTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATTGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

50.617

96.659

0.489
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

44.03

95.943

0.422
  pilG Neisseria meningitidis 44/76-A

43.424

96.181

0.418
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37
  pilC Thermus thermophilus HB27

37.94

94.988

0.36

Multiple sequence alignment