Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU76_RS05155 Genome accession   NZ_CP155979
Coordinates   1229996..1231258 (-) Length   420 a.a.
NCBI ID   WP_228442817.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain CFBP 6580     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224996..1236258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU76_RS05130 (ABFU76_05120) - 1225937..1226614 (+) 678 WP_003490678.1 response regulator transcription factor -
  ABFU76_RS05135 (ABFU76_05125) - 1226607..1227941 (+) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  ABFU76_RS05140 (ABFU76_05130) - 1228040..1228295 (-) 256 Protein_997 SymE family type I addiction module toxin -
  ABFU76_RS05145 (ABFU76_05135) coaE 1228489..1229112 (-) 624 WP_225042504.1 dephospho-CoA kinase -
  ABFU76_RS05150 (ABFU76_05140) - 1229126..1229989 (-) 864 WP_040940797.1 A24 family peptidase -
  ABFU76_RS05155 (ABFU76_05145) pilC 1229996..1231258 (-) 1263 WP_228442817.1 type II secretion system F family protein Machinery gene
  ABFU76_RS05160 (ABFU76_05150) pilA/pilAI 1231609..1232016 (+) 408 WP_228442818.1 pilin Machinery gene
  ABFU76_RS05165 (ABFU76_05155) - 1232149..1232535 (+) 387 WP_373046337.1 pilin -
  ABFU76_RS05170 (ABFU76_05160) - 1232594..1234414 (+) 1821 WP_323539564.1 hypothetical protein -
  ABFU76_RS05175 (ABFU76_05165) - 1234523..1235281 (+) 759 WP_228442820.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45810.26 Da        Isoelectric Point: 10.2311

>NTDB_id=1000630 ABFU76_RS05155 WP_228442817.1 1229996..1231258(-) (pilC) [Xanthomonas campestris pv. raphani strain CFBP 6580]
MSAVRSTIKNKPASISAEQLMSPFVWEGTDKRGVKMKGEQVARNANMLRAELRRQGITPSVVKAKPKPLFGAAGKKITPK
EIAFFSRQMATMMKSGVPIVGSLEIIGNGHKNPRMKQMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLIKAGEGAGVL
ETVLDTIASYKENLEALKGKIKKALFYPAMVVAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVSYWW
LMLLVIVGSIVGFIFAYKRSLAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYE
KAVLRMREDVSVGYPVNVSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPLIMVFIGTV
VGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1000630 ABFU76_RS05155 WP_228442817.1 1229996..1231258(-) (pilC) [Xanthomonas campestris pv. raphani strain CFBP 6580]
ATGTCGGCAGTCCGTAGCACCATCAAGAACAAACCGGCGAGCATTAGCGCCGAACAACTCATGAGCCCGTTTGTCTGGGA
GGGGACAGACAAGCGCGGCGTGAAGATGAAGGGCGAGCAGGTGGCCCGCAACGCCAACATGCTGCGGGCCGAACTCCGCC
GGCAAGGCATCACGCCCAGCGTCGTCAAGGCCAAGCCAAAGCCATTGTTCGGGGCGGCAGGCAAGAAGATCACGCCGAAG
GAAATTGCGTTCTTCAGCCGTCAGATGGCCACCATGATGAAGTCGGGCGTGCCGATTGTCGGGTCGCTGGAGATCATCGG
CAATGGTCACAAGAACCCGCGCATGAAGCAGATGGTGGGGCAGATCCGTACCGACATCGAAGGCGGATCTTCGCTGCACG
AAGCGATAAGCAAGCATCCAGTGCAGTTTGACGAGCTGTATCGCAACCTGATCAAGGCCGGCGAAGGCGCTGGTGTGCTG
GAAACCGTCCTGGATACTATCGCCTCATACAAAGAGAACCTGGAAGCCCTTAAGGGCAAAATCAAGAAGGCCCTGTTCTA
CCCTGCCATGGTCGTGGCAGTTGCCCTGCTGGTCAGCTCGATCCTGTTGATCTGGGTTGTTCCGCAGTTCGAGGATGTGT
TCAAGGGATTTGGCGCGGAACTGCCGGCATTCACCCAACTGATCGTCAATGCGTCCCGATTCATGGTCTCGTATTGGTGG
CTGATGCTGCTTGTGATCGTCGGTTCGATCGTGGGTTTCATCTTTGCCTATAAGCGCTCGCTTGCGATGCAGCATGGTAT
GGATCGGTTGGTGCTCAAGGTACCGATCATCGGCCAGATCATGCACAACAGCTCGATTGCGCGTTTTGCGCGCACTACTG
CGGTGACCTTCAAGGCAGGCGTGCCGTTGGTCGAAGCACTGGGCATCGTCGCCGGCGCCACTGGTAACTCGGTGTACGAG
AAAGCCGTGTTGCGCATGCGCGAGGATGTCTCGGTGGGCTATCCGGTCAACGTGTCGATGAAACAGGTCAATCTGTTCCC
GCATATGGTGATCCAGATGACGGCAATCGGCGAGGAAGCGGGCGCATTGGACGCCATGCTGTTCAAGGTGGCCGAGTACT
ACGAGCAGGAAGTGAACAATGCGGTGGACGCATTGAGCAGCCTCATCGAACCCCTGATCATGGTGTTCATTGGTACAGTA
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.736

95.714

0.505
  pilC Legionella pneumophila strain ERS1305867

51.095

97.857

0.5
  pilC Pseudomonas stutzeri DSM 10701

52.513

94.762

0.498
  pilC Acinetobacter baumannii D1279779

50.614

96.905

0.49
  pilG Neisseria gonorrhoeae MS11

43.719

94.762

0.414
  pilG Neisseria meningitidis 44/76-A

43.108

95

0.41
  pilC Vibrio cholerae strain A1552

41.814

94.524

0.395
  pilC Vibrio campbellii strain DS40M4

39.798

94.524

0.376

Multiple sequence alignment