Detailed information NTG1000133

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL191_RS15555
• Genome accession: NZ_LR134290
• Coordinates: 3362186..3363193 (-)
• Length: 335 a.a.
• NCBI ID: WP_013716393.1
• Uniprot ID: A0ABN4ISH6
• Organism: Ectopseudomonas mendocina strain NCTC10897
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3357186..3368193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL191_RS15540 (NCTC10897_03122)	-	3358021..3358521 (-)	501	WP_013716390.1	CinA family protein	-
EL191_RS15545 (NCTC10897_03123)	mutS	3358702..3361269 (+)	2568	WP_041981050.1	DNA mismatch repair protein MutS	-
EL191_RS15550 (NCTC10897_03124)	fdxA	3361408..3361731 (+)	324	WP_013716392.1	ferredoxin FdxA	-
EL191_RS15555 (NCTC10897_03126)	rpoS	3362186..3363193 (-)	1008	WP_013716393.1	RNA polymerase sigma factor RpoS	Regulator
EL191_RS15560 (NCTC10897_03127)	-	3363295..3364176 (-)	882	WP_080764321.1	peptidoglycan DD-metalloendopeptidase family protein	-
EL191_RS15565 (NCTC10897_03128)	-	3364225..3365163 (-)	939	WP_013716395.1	DUF368 domain-containing protein	-
EL191_RS15570 (NCTC10897_03129)	-	3365189..3365863 (-)	675	WP_013716396.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EL191_RS15575 (NCTC10897_03130)	surE	3365863..3366612 (-)	750	WP_013716397.1	5'/3'-nucleotidase SurE	-
EL191_RS15580 (NCTC10897_03131)	truD	3366600..3367658 (-)	1059	WP_041981051.1	tRNA pseudouridine(13) synthase TruD	-
EL191_RS15585 (NCTC10897_03132)	ispF	3367655..3368128 (-)	474	WP_041981052.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38255.60 Da
• Isoelectric Point: 4.9619

>NTDB_id=1000133 EL191_RS15555 WP_013716393.1 3362186..3363193(-) (rpoS) [Ectopseudomonas mendocina strain NCTC10897]
MALIKKEAPEFDVDDELLLMEPGIVFGEVQGDDLEAPVTRTKAKSATPSKQHKYIDYTRALDATQLYLNEIGFSPLLTPE
EEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSDLTDKQREVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLR
EILEKNGLSSDALFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=1000133 EL191_RS15555 WP_013716393.1 3362186..3363193(-) (rpoS) [Ectopseudomonas mendocina strain NCTC10897]
ATGGCTCTCATCAAAAAAGAAGCGCCGGAGTTTGACGTCGACGATGAACTGCTCCTCATGGAGCCCGGCATCGTTTTCGG
CGAGGTTCAGGGCGATGACCTGGAAGCACCGGTCACGCGTACCAAGGCCAAGAGCGCCACACCTTCCAAGCAGCACAAGT
ACATCGACTACACCCGGGCGCTAGACGCCACTCAGCTTTACCTCAACGAAATAGGTTTCTCTCCCCTGCTCACTCCCGAA
GAGGAAGTGCACTTCGCGCGCCTGGCGCAGAAGGGCGATCCAGCCGGGCGCAAGCGCATGATCGAGAGCAATCTGCGTCT
GGTCGTGAAAATCGCCAGGCGTTACGTCAATCGTGGTCTCTCTCTGCTCGATCTGATCGAGGAGGGTAACCTGGGCCTGA
TTCGTGCCGTGGAGAAGTTCGATCCGGAGCGGGGGTTCCGGTTTTCGACTTATGCCACCTGGTGGATCCGCCAGACCATC
GAACGGGCGATCATGAACCAGACGCGAACCATCCGTTTGCCGATTCATGTGGTCAAGGAGCTCAACGTCTATCTGCGTGC
GGCTCGTGAGCTGACCCAGAAGCTGGATCATGAGCCTTCCGCGGAAGAAATTGCCAACCTGCTGGAGAAACCGGTGGGTG
AGGTCAAACGTATGCTTGGCCTCAACGAGCGGGTGTCTTCGGTAGATGTCTCGCTCGGTCCGGACTCGGACAAGACGCTA
CTCGACACCCTGACCGATGATCGTCCGACCGATCCCTGCGAGCTGCTGCAGGATGATGATCTGTCGCAGAGTATCGATCA
GTGGTTGTCGGACTTGACCGATAAGCAACGCGAAGTCGTCGTGCGTCGTTTTGGTCTGCGTGGGCATGAGAGCTGTACGC
TGGAAGAGGTAGGCCAGGAGATCGGCCTGACGCGTGAGCGTGTACGCCAGATCCAGGTCGAAGCGCTCAAGCGCCTGCGC
GAAATCCTGGAGAAGAATGGCCTGTCCAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.138	97.612	0.636