MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 155641 bp
Accession: NZ_CP020863 Location: 808893..964533 Organism: Streptococcus suis strain SC19 Replicon: chromosome
Accession: NZ_CP020863 Location: 808893..964533 Organism: Streptococcus suis strain SC19 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9H01_RS04045 () | 804688..805062 | + | 375 | WP_002934959.1 | DUF1149 family protein | - |
| B9H01_RS04050 () | 805064..805915 | + | 852 | WP_011922353.1 | DegV family protein | - |
| B9H01_RS04055 () | 805924..806691 | + | 768 | WP_011922354.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| B9H01_RS04060 () | 806688..807899 | + | 1212 | WP_011922355.1 | CCA tRNA nucleotidyltransferase | - |
| B9H01_RS04065 () | 807892..809760 | + | 1869 | WP_011922356.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| B9H01_RS04070 () | 809761..810096 | + | 336 | WP_002934966.1 | hypothetical protein | - |
| B9H01_RS04075 () | 810192..811151 | + | 960 | WP_012775086.1 | ROK family glucokinase | - |
| B9H01_RS04080 () | 811277..811555 | + | 279 | WP_012775087.1 | hypothetical protein | - |
| B9H01_RS04085 () | 811567..811869 | + | 303 | WP_012775088.1 | hypothetical protein | - |
| B9H01_RS04090 () | 811922..812761 | + | 840 | WP_011922359.1 | thymidylate synthase | - |
| B9H01_RS04095 () | 813047..813559 | + | 513 | WP_011922360.1 | dihydrofolate reductase | - |
| B9H01_RS04105 () | 813757..814983 | + | 1227 | WP_002934974.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| B9H01_RS04110 () | 815039..815626 | + | 588 | WP_012775089.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| B9H01_RS04115 () | 815649..816062 | + | 414 | WP_012028095.1 | nucleoside-diphosphate kinase | - |
| B9H01_RS04120 () | 816166..816837 | + | 672 | WP_011922364.1 | HIRAN domain-containing protein | - |
| B9H01_RS04125 () | 817119..818951 | + | 1833 | WP_002943192.1 | translation elongation factor 4 | - |
| B9H01_RS04130 () | 819001..819183 | - | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| B9H01_RS04135 () | 819318..820625 | + | 1308 | WP_012028097.1 | excalibur calcium-binding domain-containing protein | - |
| B9H01_RS04145 () | 821010..821591 | + | 582 | WP_012028098.1 | thymidine kinase | - |
| B9H01_RS04150 () | 822042..823121 | + | 1080 | WP_012775090.1 | peptide chain release factor 1 | - |
| B9H01_RS04155 () | 823121..823954 | + | 834 | WP_011922371.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| B9H01_RS04160 () | 823941..824549 | + | 609 | WP_011922372.1 | threonylcarbamoyl-AMP synthase | - |
| B9H01_RS04165 () | 824546..824977 | + | 432 | WP_011922373.1 | GNAT family N-acetyltransferase | - |
| B9H01_RS04170 () | 825001..826260 | + | 1260 | WP_011922374.1 | serine hydroxymethyltransferase | - |
| B9H01_RS04175 () | 826260..827234 | + | 975 | WP_002943200.1 | nucleoid-associated protein | - |
| B9H01_RS04180 () | 827235..827834 | + | 600 | WP_011922375.1 | lysozyme family protein | - |
| B9H01_RS04185 () | 827935..828693 | + | 759 | WP_002943202.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| B9H01_RS04190 () | 828710..829459 | + | 750 | WP_011922377.1 | translation initiation factor 1 | - |
| B9H01_RS04195 () | 829481..829834 | + | 354 | WP_002943204.1 | HIRAN domain-containing protein | - |
| B9H01_RS04200 () | 829855..830802 | - | 948 | WP_011922378.1 | hypothetical protein | - |
| B9H01_RS04205 () | 830830..831618 | - | 789 | WP_012775093.1 | hypothetical protein | - |
| B9H01_RS04210 () | 831814..833511 | + | 1698 | WP_012775094.1 | AAA family ATPase | - |
| B9H01_RS04215 () | 833508..834557 | + | 1050 | WP_011922381.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| B9H01_RS04220 () | 834763..836073 | - | 1311 | WP_011922382.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| B9H01_RS04225 () | 836045..836278 | - | 234 | WP_011922383.1 | DUF3173 domain-containing protein | - |
| B9H01_RS04230 () | 836256..837494 | - | 1239 | WP_014636592.1 | replication initiation protein | - |
| B9H01_RS04235 () | 838004..838528 | - | 525 | WP_011922385.1 | hypothetical protein | - |
| B9H01_RS04240 () | 838556..838861 | - | 306 | WP_012775097.1 | hypothetical protein | - |
| B9H01_RS04245 () | 839114..840415 | + | 1302 | WP_012775098.1 | hypothetical protein | - |
| B9H01_RS04250 () | 840440..840646 | - | 207 | WP_012775099.1 | helix-turn-helix domain-containing protein | - |
| B9H01_RS04255 () | 840763..841740 | + | 978 | WP_011922387.1 | membrane protein | - |
| B9H01_RS04260 () | 841756..842595 | + | 840 | WP_011922388.1 | hypothetical protein | - |
| B9H01_RS04265 () | 842612..843016 | + | 405 | WP_012028114.1 | hypothetical protein | - |
| B9H01_RS04270 () | 843171..844193 | + | 1023 | WP_012775100.1 | hypothetical protein | - |
| B9H01_RS04275 () | 844183..845799 | + | 1617 | WP_011922392.1 | hypothetical protein | - |
| B9H01_RS04280 () | 846011..847561 | - | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| B9H01_RS04285 () | 847837..848535 | + | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| B9H01_RS04290 () | 848638..848970 | + | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| B9H01_RS04295 () | 848983..850521 | + | 1539 | WP_011922394.1 | signal recognition particle protein | - |
| B9H01_RS04300 () | 850715..851382 | + | 668 | Protein_770 | SatD family protein | - |
| B9H01_RS04305 () | 851386..852126 | + | 741 | WP_011922396.1 | DUF3307 domain-containing protein | - |
| B9H01_RS04310 () | 852191..852628 | + | 438 | WP_011922397.1 | AAA family ATPase | - |
| B9H01_RS04315 () | 853279..853584 | + | 306 | WP_015445217.1 | Abi family protein | - |
| B9H01_RS04320 () | 853632..854240 | + | 609 | Protein_774 | Abi family protein | - |
| B9H01_RS04325 () | 854601..855671 | + | 1071 | WP_012775101.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| B9H01_RS04330 () | 855741..857249 | - | 1509 | WP_011922400.1 | Phosphomannomutase/phosphoglucomutase | VF |
| B9H01_RS04335 () | 857325..858266 | - | 942 | WP_012775102.1 | sensor histidine kinase | - |
| B9H01_RS04340 () | 858263..858928 | - | 666 | WP_012775103.1 | Response regulator protein GraR | VF |
| B9H01_RS04345 () | 858967..859224 | - | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B9H01_RS04350 () | 859208..859459 | - | 252 | WP_012775104.1 | hypothetical protein | Antitoxin Detail |
| B9H01_RS04355 () | 859551..861521 | - | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
| B9H01_RS04360 () | 861522..862274 | - | 753 | WP_011922409.1 | ABC transporter ATP-binding protein YxdL | VF |
| B9H01_RS04365 () | 862410..863144 | - | 735 | WP_011922410.1 | ABC transporter permease | - |
| B9H01_RS04370 () | 863146..863892 | - | 747 | WP_011922411.1 | ABC transporter permease | - |
| B9H01_RS04375 () | 863894..864796 | - | 903 | WP_011922412.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| B9H01_RS04380 () | 864817..865194 | - | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| B9H01_RS10650 () | 865207..865347 | - | 141 | WP_012775106.1 | hypothetical protein | - |
| B9H01_RS04390 () | 865487..866653 | - | 1167 | WP_011922414.1 | carbamoyl phosphate synthase large subunit | - |
| B9H01_RS04395 () | 866671..867417 | - | 747 | WP_011922415.1 | esterase family protein | - |
| B9H01_RS04400 () | 867448..868275 | - | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| B9H01_RS04405 () | 868389..869393 | - | 1005 | WP_012775107.1 | winged helix DNA-binding domain-containing protein | - |
| B9H01_RS04410 () | 869458..870294 | - | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| B9H01_RS04415 () | 870371..871705 | - | 1335 | WP_011922419.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| B9H01_RS04420 () | 871901..872650 | - | 750 | WP_011922420.1 | HAD family hydrolase | - |
| B9H01_RS04425 () | 872835..874034 | - | 1200 | WP_012775108.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| B9H01_RS04430 () | 874057..874284 | - | 228 | WP_001258320.1 | DUF3173 family protein | - |
| B9H01_RS04435 () | 874563..874784 | - | 222 | WP_011922422.1 | helix-turn-helix transcriptional regulator | - |
| B9H01_RS04440 () | 875114..876211 | - | 1098 | WP_012028132.1 | HAMP domain-containing histidine kinase | - |
| B9H01_RS04445 () | 876196..876879 | - | 684 | WP_011922424.1 | Response regulator ArlR | VF |
| B9H01_RS04450 () | 876910..877617 | - | 708 | WP_012028134.1 | ABC transporter permease | - |
| B9H01_RS04455 () | 877614..878405 | - | 792 | WP_032509741.1 | membrane protein | - |
| B9H01_RS04460 () | 878395..879111 | - | 717 | WP_011922427.1 | putative ABC transporter ATP-binding protein YxlF | VF |
| B9H01_RS04465 () | 879132..881354 | - | 2223 | WP_011922428.1 | Multidrug resistance ABC transporter ATP-binding and permease protein | VF |
| B9H01_RS04470 () | 881358..881609 | - | 252 | WP_012775110.1 | PqqD family protein | - |
| B9H01_RS04475 () | 881621..883348 | - | 1728 | WP_024379090.1 | asparagine synthetase | - |
| B9H01_RS10575 () | 883464..883592 | - | 129 | WP_012775112.1 | hypothetical protein | - |
| B9H01_RS10580 () | 883824..883946 | - | 123 | WP_103557055.1 | putative RiPP precursor | - |
| B9H01_RS04480 () | 884277..886142 | - | 1866 | WP_011922430.1 | relaxase/mobilization nuclease domain-containing protein | - |
| B9H01_RS04485 () | 886129..886494 | - | 366 | WP_011922431.1 | MobC family plasmid mobilization relaxosome protein | - |
| B9H01_RS04490 () | 886494..886859 | - | 366 | WP_012775113.1 | hypothetical protein | - |
| B9H01_RS04495 () | 887224..888120 | + | 897 | WP_011922433.1 | ATP-binding protein | - |
| B9H01_RS04500 () | 888242..889459 | - | 1218 | WP_001291561.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| B9H01_RS04505 () | 889541..889744 | - | 204 | WP_000814511.1 | excisionase | - |
| B9H01_RS04515 () | 890205..890435 | - | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| B9H01_RS04520 () | 890432..890854 | - | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| B9H01_RS04525 () | 891358..891711 | + | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| B9H01_RS04530 () | 891771..891938 | - | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| B9H01_RS04535 () | 892057..893976 | - | 1920 | WP_001574275.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| B9H01_RS04540 () | 893992..894108 | - | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| B9H01_RS04545 () | 894353..895285 | - | 933 | WP_001224319.1 | conjugal transfer protein | - |
| B9H01_RS04550 () | 895282..896283 | - | 1002 | WP_000769868.1 | putative endopeptidase p60 | VF |
| B9H01_RS04555 () | 896280..898457 | - | 2178 | WP_000804748.1 | membrane protein | - |
| B9H01_RS04560 () | 898460..900907 | - | 2448 | WP_000331160.1 | ATP-binding protein | - |
| B9H01_RS04565 () | 900891..901397 | - | 507 | WP_000506270.1 | conjugal transfer protein | - |
| B9H01_RS04570 () | 901372..901869 | - | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| B9H01_RS04575 () | 901986..902207 | - | 222 | WP_001009056.1 | hypothetical protein | - |
| B9H01_RS04580 () | 902250..903455 | - | 1206 | WP_000398284.1 | replication initiation factor domain-containing protein | - |
| B9H01_RS04585 () | 903478..903630 | - | 153 | WP_000879507.1 | hypothetical protein | - |
| B9H01_RS04590 () | 903633..905018 | - | 1386 | WP_000813488.1 | DNA translocase FtsK | - |
| B9H01_RS04595 () | 905047..905433 | - | 387 | WP_000985015.1 | YdcP family protein | - |
| B9H01_RS04600 () | 905449..905763 | - | 315 | WP_000420682.1 | YdcP family protein | - |
| B9H01_RS10595 () | 906107..906424 | + | 318 | Protein_832 | ATP-binding protein | - |
| B9H01_RS04605 () | 906519..908336 | - | 1818 | WP_012775114.1 | ATP-dependent helicase | - |
| B9H01_RS04610 () | 908323..910410 | - | 2088 | WP_011922436.1 | AAA family ATPase | - |
| B9H01_RS04615 () | 910407..911183 | - | 777 | WP_011922437.1 | zeta toxin family protein | Toxin Detail |
| B9H01_RS04620 () | 911183..911659 | - | 477 | WP_012775115.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| B9H01_RS04625 () | 911729..912019 | - | 291 | WP_024379089.1 | hypothetical protein | - |
| B9H01_RS04630 () | 912069..912458 | - | 390 | WP_011922440.1 | methyl-accepting chemotaxis protein | - |
| B9H01_RS04635 () | 912455..912682 | - | 228 | WP_011922441.1 | hypothetical protein | - |
| B9H01_RS04640 () | 912736..913812 | - | 1077 | WP_011922442.1 | toprim domain-containing protein | - |
| B9H01_RS04645 () | 913851..914489 | - | 639 | WP_011922443.1 | hypothetical protein | - |
| B9H01_RS04650 () | 915890..916489 | - | 600 | WP_011922444.1 | response regulator transcription factor | - |
| B9H01_RS04655 () | 916467..917975 | - | 1509 | WP_012028145.1 | ATP-binding protein | - |
| B9H01_RS04660 () | 917979..918668 | - | 690 | WP_012775116.1 | ABC transporter permease | - |
| B9H01_RS04665 () | 918678..919397 | - | 720 | WP_012028147.1 | ABC transporter permease | - |
| B9H01_RS04670 () | 919375..920289 | - | 915 | WP_011922447.1 | Ribosome-associated ATPase | VF |
| B9H01_RS04675 () | 920261..922336 | - | 2076 | WP_012028148.1 | ATP-binding cassette domain-containing protein | - |
| B9H01_RS04680 () | 922342..923454 | - | 1113 | WP_011922450.1 | lantibiotic-modifying protein | - |
| B9H01_RS10690 () | 923781..923945 | + | 165 | Protein_849 | DNA recombinase | - |
| B9H01_RS04685 () | 923982..924278 | + | 297 | WP_002360685.1 | hypothetical protein | - |
| B9H01_RS04690 () | 924279..924695 | + | 417 | WP_000323438.1 | hypothetical protein ; Integrase | Integrase |
| B9H01_RS04695 () | 924715..926259 | + | 1545 | WP_002390960.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| B9H01_RS04700 () | 926402..926626 | + | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| B9H01_RS04705 () | 926641..927510 | + | 870 | WP_000233000.1 | nucleotidyltransferase domain-containing protein | Toxin Detail |
| B9H01_RS04710 () | 927491..928225 | + | 735 | WP_000662263.1 | class I SAM-dependent methyltransferase | - |
| B9H01_RS04715 () | 928258..929121 | + | 864 | WP_002294505.1 | Aminoglycoside 6-adenylyltransferase | ARG |
| B9H01_RS04720 () | 929165..929692 | + | 528 | WP_002294507.1 | adenine phosphoribosyltransferase | - |
| B9H01_RS04725 () | 929920..931239 | + | 1320 | WP_002338419.1 | IS1380 family transposase ISSsu5 | Transposase |
| B9H01_RS04730 () | 931428..932825 | - | 1398 | WP_011922451.1 | DUF4135 domain-containing protein | - |
| B9H01_RS04735 () | 932909..933082 | - | 174 | WP_012775117.1 | type A2 lantipeptide | - |
| B9H01_RS04740 () | 933423..933719 | - | 297 | WP_012775118.1 | hypothetical protein | - |
| B9H01_RS04745 () | 933733..934032 | - | 300 | WP_011922452.1 | hypothetical protein | - |
| B9H01_RS04750 () | 934103..940927 | - | 6825 | WP_012775119.1 | DEAD/DEAH box helicase family protein | - |
| B9H01_RS04755 () | 940977..941528 | - | 552 | WP_012775120.1 | hypothetical protein | - |
| B9H01_RS04760 () | 941512..941703 | - | 192 | WP_011922455.1 | calcium-binding protein | - |
| B9H01_RS04765 () | 941704..946599 | - | 4896 | WP_012775121.1 | Agglutinin receptor | VF |
| B9H01_RS04770 () | 946771..947361 | + | 591 | WP_011922457.1 | transcriptional regulator | Antitoxin Detail |
| B9H01_RS04775 () | 947358..948203 | + | 846 | WP_011922458.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| B9H01_RS04780 () | 948266..951067 | - | 2802 | WP_011922459.1 | CHAP domain-containing protein | - |
| B9H01_RS04785 () | 951069..953420 | - | 2352 | WP_011922460.1 | ATPase AAA | - |
| B9H01_RS04790 () | 953377..953730 | - | 354 | WP_012775123.1 | PrgI family protein | - |
| B9H01_RS04795 () | 953792..954646 | - | 855 | WP_011922462.1 | conjugal transfer protein TrbL | - |
| B9H01_RS04800 () | 954665..954907 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| B9H01_RS04805 () | 954925..956742 | - | 1818 | WP_011922464.1 | type IV secretory system conjugative DNA transfer family protein | - |
| B9H01_RS04810 () | 956742..957230 | - | 489 | WP_012775124.1 | hypothetical protein | - |
| B9H01_RS04815 () | 957308..957892 | - | 585 | WP_012775125.1 | CPBP family intramembrane metalloprotease | - |
| B9H01_RS04820 () | 957895..958128 | - | 234 | WP_001005708.1 | hypothetical protein | - |
| B9H01_RS04825 () | 958137..958520 | - | 384 | WP_012775126.1 | hypothetical protein | - |
| B9H01_RS04830 () | 958531..958959 | - | 429 | WP_011922469.1 | hypothetical protein | - |
| B9H01_RS04835 () | 958943..960298 | - | 1356 | WP_011922470.1 | DNA (cytosine-5-)-methyltransferase | - |
| B9H01_RS04840 () | 960447..961265 | - | 819 | WP_011922472.1 | replication initiator protein A | - |
| B9H01_RS10655 () | 961262..961435 | - | 174 | WP_012775127.1 | hypothetical protein | - |
| B9H01_RS04850 () | 961634..961999 | - | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| B9H01_RS04855 () | 962065..962559 | - | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| B9H01_RS04860 () | 963136..965229 | - | 2094 | WP_012775128.1 | type I DNA topoisomerase | - |
| B9H01_RS04865 () | 965322..966164 | - | 843 | WP_012775129.1 | DNA-processing protein DprA | - |
| B9H01_RS04870 () | 966223..966780 | - | 558 | WP_011922479.1 | sugar O-acetyltransferase | - |
| B9H01_RS04875 () | 966791..967051 | - | 261 | WP_009909865.1 | metal-sensitive transcriptional regulator | - |
| B9H01_RS04880 () | 967158..967481 | + | 324 | WP_012775130.1 | rhodanese-like domain-containing protein | - |
| B9H01_RS04885 () | 967478..969136 | + | 1659 | WP_011922481.1 | FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus suis SC84 | Integrative and Conjugative Element | TA23991, TA23992, TA23993, TA23994 | NC_012924 | 808819..964460 | 0 | |
| Streptococcus suis strain ZY05719 isolate diseased pig | Integrative and Conjugative Element | TA10053, TA46533, TA46534, TA46536 | NZ_CP007497 | 808718..964358 | 0 |