MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 155642 bp
Accession: NZ_CP018908 Location: 785098..940739 Organism: Streptococcus suis strain SS2-1 Replicon: chromosome
Accession: NZ_CP018908 Location: 785098..940739 Organism: Streptococcus suis strain SS2-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVD85_RS03875 () | 780893..781267 | + | 375 | WP_002934959.1 | DUF1149 family protein | - |
| BVD85_RS03880 () | 781269..782120 | + | 852 | WP_011922353.1 | DegV family protein | - |
| BVD85_RS03885 () | 782129..782896 | + | 768 | WP_011922354.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| BVD85_RS03890 () | 782893..784104 | + | 1212 | WP_011922355.1 | CCA tRNA nucleotidyltransferase | - |
| BVD85_RS03895 () | 784097..785965 | + | 1869 | WP_011922356.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| BVD85_RS03900 () | 785966..786301 | + | 336 | WP_002934966.1 | hypothetical protein | - |
| BVD85_RS03905 () | 786397..787356 | + | 960 | WP_012775086.1 | ROK family glucokinase | - |
| BVD85_RS03910 () | 787482..787760 | + | 279 | WP_012775087.1 | hypothetical protein | - |
| BVD85_RS03915 () | 787772..788074 | + | 303 | WP_012775088.1 | hypothetical protein | - |
| BVD85_RS03920 () | 788127..788966 | + | 840 | WP_011922359.1 | thymidylate synthase | - |
| BVD85_RS03925 () | 789252..789764 | + | 513 | WP_011922360.1 | dihydrofolate reductase | - |
| BVD85_RS03935 () | 789962..791188 | + | 1227 | WP_002934974.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| BVD85_RS03940 () | 791244..791831 | + | 588 | WP_012775089.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| BVD85_RS03945 () | 791854..792267 | + | 414 | WP_012028095.1 | nucleoside-diphosphate kinase | - |
| BVD85_RS03950 () | 792371..793042 | + | 672 | WP_011922364.1 | HIRAN domain-containing protein | - |
| BVD85_RS03955 () | 793324..795156 | + | 1833 | WP_002943192.1 | translation elongation factor 4 | - |
| BVD85_RS03960 () | 795206..795388 | - | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| BVD85_RS03965 () | 795523..796830 | + | 1308 | WP_012028097.1 | excalibur calcium-binding domain-containing protein | - |
| BVD85_RS03975 () | 797215..797796 | + | 582 | WP_012028098.1 | thymidine kinase | - |
| BVD85_RS03980 () | 798247..799326 | + | 1080 | WP_012775090.1 | peptide chain release factor 1 | - |
| BVD85_RS03985 () | 799326..800159 | + | 834 | WP_011922371.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| BVD85_RS03990 () | 800146..800754 | + | 609 | WP_011922372.1 | threonylcarbamoyl-AMP synthase | - |
| BVD85_RS03995 () | 800751..801182 | + | 432 | WP_011922373.1 | GNAT family N-acetyltransferase | - |
| BVD85_RS04000 () | 801206..802465 | + | 1260 | WP_011922374.1 | serine hydroxymethyltransferase | - |
| BVD85_RS04005 () | 802465..803439 | + | 975 | WP_002943200.1 | nucleoid-associated protein | - |
| BVD85_RS04010 () | 803440..804039 | + | 600 | WP_011922375.1 | lysozyme family protein | - |
| BVD85_RS04015 () | 804140..804898 | + | 759 | WP_002943202.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| BVD85_RS04020 () | 804915..805664 | + | 750 | WP_011922377.1 | translation initiation factor 1 | - |
| BVD85_RS04025 () | 805686..806039 | + | 354 | WP_002943204.1 | HIRAN domain-containing protein | - |
| BVD85_RS04030 () | 806060..807007 | - | 948 | WP_011922378.1 | hypothetical protein | - |
| BVD85_RS04035 () | 807035..807823 | - | 789 | WP_012775093.1 | hypothetical protein | - |
| BVD85_RS04040 () | 808019..809716 | + | 1698 | WP_012775094.1 | AAA family ATPase | - |
| BVD85_RS04045 () | 809713..810762 | + | 1050 | WP_011922381.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| BVD85_RS04050 () | 810968..812278 | - | 1311 | WP_011922382.1 | site-specific integrase | - |
| BVD85_RS04055 () | 812250..812483 | - | 234 | WP_011922383.1 | DUF3173 domain-containing protein | - |
| BVD85_RS04060 () | 812461..813699 | - | 1239 | WP_014636592.1 | replication initiation protein | - |
| BVD85_RS04065 () | 814209..814733 | - | 525 | WP_011922385.1 | hypothetical protein | - |
| BVD85_RS04070 () | 814761..815066 | - | 306 | WP_012775097.1 | hypothetical protein | - |
| BVD85_RS04075 () | 815319..816620 | + | 1302 | WP_012775098.1 | hypothetical protein | - |
| BVD85_RS04080 () | 816645..816851 | - | 207 | WP_012775099.1 | helix-turn-helix domain-containing protein | - |
| BVD85_RS04085 () | 816968..817945 | + | 978 | WP_011922387.1 | membrane protein | - |
| BVD85_RS04090 () | 817961..818800 | + | 840 | WP_011922388.1 | hypothetical protein | - |
| BVD85_RS04095 () | 818817..819221 | + | 405 | WP_012028114.1 | hypothetical protein | - |
| BVD85_RS04100 () | 819376..820398 | + | 1023 | WP_012775100.1 | hypothetical protein | - |
| BVD85_RS04105 () | 820388..822004 | + | 1617 | WP_011922392.1 | hypothetical protein | - |
| BVD85_RS04110 () | 822216..823766 | - | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| BVD85_RS04115 () | 824042..824740 | + | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| BVD85_RS04120 () | 824843..825175 | + | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| BVD85_RS04125 () | 825188..826726 | + | 1539 | WP_011922394.1 | signal recognition particle protein | - |
| BVD85_RS04130 () | 826920..827588 | + | 669 | WP_011922395.1 | SatD family protein | - |
| BVD85_RS04135 () | 827592..828332 | + | 741 | WP_011922396.1 | DUF3307 domain-containing protein | - |
| BVD85_RS04140 () | 828397..828834 | + | 438 | WP_011922397.1 | AAA family ATPase | - |
| BVD85_RS10550 () | 829485..829790 | + | 306 | WP_015445217.1 | Abi family protein | - |
| BVD85_RS10555 () | 829838..830446 | + | 609 | Protein_758 | Abi family protein | - |
| BVD85_RS04150 () | 830807..831877 | + | 1071 | WP_012775101.1 | tyrosine recombinase XerS | - |
| BVD85_RS04155 () | 831947..833455 | - | 1509 | WP_011922400.1 | phosphomannomutase/phosphoglucomutase | - |
| BVD85_RS04160 () | 833531..834472 | - | 942 | WP_012775102.1 | sensor histidine kinase | - |
| BVD85_RS04165 () | 834469..835134 | - | 666 | WP_012775103.1 | response regulator transcription factor | - |
| BVD85_RS04170 () | 835173..835430 | - | 258 | WP_011922404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BVD85_RS04175 () | 835414..835665 | - | 252 | WP_012775104.1 | hypothetical protein | Antitoxin Detail |
| BVD85_RS04180 () | 835757..837727 | - | 1971 | WP_012775105.1 | FtsX-like permease family protein | - |
| BVD85_RS04185 () | 837728..838480 | - | 753 | WP_011922409.1 | ABC transporter ATP-binding protein | - |
| BVD85_RS04190 () | 838616..839350 | - | 735 | WP_011922410.1 | ABC transporter permease | - |
| BVD85_RS04195 () | 839352..840098 | - | 747 | WP_011922411.1 | ABC transporter permease | - |
| BVD85_RS04200 () | 840100..841002 | - | 903 | WP_011922412.1 | ABC transporter ATP-binding protein | - |
| BVD85_RS04205 () | 841023..841400 | - | 378 | WP_011922413.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| BVD85_RS04210 () | 841413..841553 | - | 141 | WP_012775106.1 | hypothetical protein | - |
| BVD85_RS04215 () | 841693..842859 | - | 1167 | WP_011922414.1 | carbamoyl phosphate synthase large subunit | - |
| BVD85_RS04220 () | 842877..843623 | - | 747 | WP_011922415.1 | esterase family protein | - |
| BVD85_RS04225 () | 843654..844481 | - | 828 | WP_011922416.1 | alpha/beta hydrolase | - |
| BVD85_RS04230 () | 844595..845599 | - | 1005 | WP_012775107.1 | winged helix DNA-binding domain-containing protein | - |
| BVD85_RS04235 () | 845664..846500 | - | 837 | WP_014636394.1 | AraC family transcriptional regulator | - |
| BVD85_RS04240 () | 846577..847911 | - | 1335 | WP_011922419.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| BVD85_RS04245 () | 848107..848856 | - | 750 | WP_011922420.1 | HAD family hydrolase | - |
| BVD85_RS04250 () | 849041..850240 | - | 1200 | WP_012775108.1 | site-specific integrase | - |
| BVD85_RS04255 () | 850263..850490 | - | 228 | WP_001258320.1 | DUF3173 family protein | - |
| BVD85_RS04260 () | 850769..850990 | - | 222 | WP_011922422.1 | helix-turn-helix transcriptional regulator | - |
| BVD85_RS04265 () | 851320..852417 | - | 1098 | WP_012028132.1 | HAMP domain-containing histidine kinase | - |
| BVD85_RS04270 () | 852402..853085 | - | 684 | WP_011922424.1 | response regulator transcription factor | - |
| BVD85_RS04275 () | 853116..853823 | - | 708 | WP_012028134.1 | ABC transporter permease | - |
| BVD85_RS04280 () | 853820..854611 | - | 792 | WP_032509741.1 | membrane protein | - |
| BVD85_RS04285 () | 854601..855317 | - | 717 | WP_011922427.1 | ATP-binding cassette domain-containing protein | - |
| BVD85_RS04290 () | 855338..857560 | - | 2223 | WP_011922428.1 | lasso peptide biosynthesis B2 protein | - |
| BVD85_RS04295 () | 857564..857815 | - | 252 | WP_012775110.1 | PqqD family protein | - |
| BVD85_RS04300 () | 857827..859554 | - | 1728 | WP_024379090.1 | asparagine synthetase | - |
| BVD85_RS10615 () | 859670..859798 | - | 129 | WP_012775112.1 | hypothetical protein | - |
| BVD85_RS10620 () | 860030..860152 | - | 123 | WP_103557055.1 | putative RiPP precursor | - |
| BVD85_RS04305 () | 860483..862348 | - | 1866 | WP_011922430.1 | relaxase/mobilization nuclease domain-containing protein | - |
| BVD85_RS04310 () | 862335..862700 | - | 366 | WP_011922431.1 | MobC family plasmid mobilization relaxosome protein | - |
| BVD85_RS04315 () | 862700..863065 | - | 366 | WP_012775113.1 | hypothetical protein | - |
| BVD85_RS04325 () | 863430..864326 | + | 897 | WP_011922433.1 | ATP-binding protein | - |
| BVD85_RS04330 () | 864448..865665 | - | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| BVD85_RS04335 () | 865747..865950 | - | 204 | WP_000814511.1 | excisionase | - |
| BVD85_RS04345 () | 866411..866641 | - | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| BVD85_RS04350 () | 866638..867060 | - | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| BVD85_RS04355 () | 867564..867917 | + | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| BVD85_RS04360 () | 867977..868144 | - | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| BVD85_RS04365 () | 868263..870182 | - | 1920 | WP_001574275.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| BVD85_RS04370 () | 870198..870314 | - | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| BVD85_RS04375 () | 870559..871491 | - | 933 | WP_001224319.1 | conjugal transfer protein | - |
| BVD85_RS04380 () | 871488..872489 | - | 1002 | WP_000769868.1 | bifunctional lysozyme/C40 family peptidase | - |
| BVD85_RS04385 () | 872486..874663 | - | 2178 | WP_000804748.1 | membrane protein | - |
| BVD85_RS04390 () | 874666..877113 | - | 2448 | WP_000331160.1 | ATP-binding protein | - |
| BVD85_RS04395 () | 877097..877603 | - | 507 | WP_000506270.1 | conjugal transfer protein | - |
| BVD85_RS04400 () | 877578..878075 | - | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| BVD85_RS04405 () | 878192..878413 | - | 222 | WP_001009056.1 | hypothetical protein | - |
| BVD85_RS04410 () | 878456..879661 | - | 1206 | WP_000398284.1 | replication initiation factor domain-containing protein | - |
| BVD85_RS04415 () | 879684..879836 | - | 153 | WP_000879507.1 | hypothetical protein | - |
| BVD85_RS04420 () | 879839..881224 | - | 1386 | WP_000813488.1 | DNA translocase FtsK | - |
| BVD85_RS04425 () | 881253..881639 | - | 387 | WP_000985015.1 | YdcP family protein | - |
| BVD85_RS04430 () | 881655..881969 | - | 315 | WP_000420682.1 | YdcP family protein | - |
| BVD85_RS10640 () | 882313..882630 | + | 318 | Protein_816 | ATP-binding protein | - |
| BVD85_RS04435 () | 882725..884542 | - | 1818 | WP_012775114.1 | ATP-dependent helicase | - |
| BVD85_RS04440 () | 884529..886616 | - | 2088 | WP_011922436.1 | AAA family ATPase | - |
| BVD85_RS04445 () | 886613..887389 | - | 777 | WP_011922437.1 | zeta toxin family protein | Toxin Detail |
| BVD85_RS04450 () | 887389..887865 | - | 477 | WP_012775115.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| BVD85_RS04455 () | 887935..888225 | - | 291 | WP_024379089.1 | hypothetical protein | - |
| BVD85_RS04460 () | 888275..888664 | - | 390 | WP_011922440.1 | methyl-accepting chemotaxis protein | - |
| BVD85_RS04465 () | 888661..888888 | - | 228 | WP_011922441.1 | hypothetical protein | - |
| BVD85_RS04470 () | 888942..890018 | - | 1077 | WP_011922442.1 | toprim domain-containing protein | - |
| BVD85_RS04475 () | 890057..890695 | - | 639 | WP_011922443.1 | hypothetical protein | - |
| BVD85_RS04480 () | 892096..892695 | - | 600 | WP_011922444.1 | response regulator transcription factor | - |
| BVD85_RS04485 () | 892673..894181 | - | 1509 | WP_012028145.1 | ATP-binding protein | - |
| BVD85_RS04490 () | 894185..894874 | - | 690 | WP_012775116.1 | ABC transporter permease | - |
| BVD85_RS04495 () | 894884..895603 | - | 720 | WP_012028147.1 | ABC transporter permease | - |
| BVD85_RS04500 () | 895581..896495 | - | 915 | WP_011922447.1 | ATP-binding cassette domain-containing protein | - |
| BVD85_RS04505 () | 896467..898542 | - | 2076 | WP_012028148.1 | ATP-binding cassette domain-containing protein | - |
| BVD85_RS04510 () | 898548..899660 | - | 1113 | WP_011922450.1 | lantibiotic-modifying protein | - |
| BVD85_RS10730 () | 899987..900151 | + | 165 | Protein_833 | DNA recombinase | - |
| BVD85_RS04515 () | 900188..900484 | + | 297 | WP_002360685.1 | hypothetical protein | - |
| BVD85_RS04520 () | 900485..900901 | + | 417 | WP_000323438.1 | recombinase | - |
| BVD85_RS04525 () | 900921..902465 | + | 1545 | WP_002390960.1 | recombinase family protein | - |
| BVD85_RS04530 () | 902608..902832 | + | 225 | WP_000205227.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| BVD85_RS04535 () | 902847..903716 | + | 870 | WP_000233000.1 | nucleotidyltransferase domain-containing protein | Toxin Detail |
| BVD85_RS04540 () | 903697..904431 | + | 735 | WP_000662263.1 | class I SAM-dependent methyltransferase | - |
| BVD85_RS04545 () | 904464..905327 | + | 864 | WP_002294505.1 | aminoglycoside nucleotidyltransferase ANT(6)-Ia | - |
| BVD85_RS04550 () | 905371..905898 | + | 528 | WP_002294507.1 | adenine phosphoribosyltransferase | - |
| BVD85_RS04555 () | 906126..907445 | + | 1320 | WP_002338419.1 | IS1380-like element ISSsu5 family transposase | - |
| BVD85_RS04560 () | 907634..909031 | - | 1398 | WP_011922451.1 | DUF4135 domain-containing protein | - |
| BVD85_RS04565 () | 909115..909288 | - | 174 | WP_012775117.1 | type A2 lantipeptide | - |
| BVD85_RS04570 () | 909629..909925 | - | 297 | WP_012775118.1 | hypothetical protein | - |
| BVD85_RS04575 () | 909939..910238 | - | 300 | WP_011922452.1 | hypothetical protein | - |
| BVD85_RS04580 () | 910309..917133 | - | 6825 | WP_012775119.1 | DEAD/DEAH box helicase family protein | - |
| BVD85_RS04585 () | 917183..917734 | - | 552 | WP_012775120.1 | hypothetical protein | - |
| BVD85_RS04590 () | 917718..917909 | - | 192 | WP_011922455.1 | calcium-binding protein | - |
| BVD85_RS04595 () | 917910..922805 | - | 4896 | WP_012775121.1 | LPXTG cell wall anchor domain-containing protein | - |
| BVD85_RS04600 () | 922977..923567 | + | 591 | WP_011922457.1 | transcriptional regulator | Antitoxin Detail |
| BVD85_RS04605 () | 923564..924409 | + | 846 | WP_011922458.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| BVD85_RS04610 () | 924472..927273 | - | 2802 | WP_011922459.1 | CHAP domain-containing protein | - |
| BVD85_RS04615 () | 927275..929626 | - | 2352 | WP_011922460.1 | ATPase AAA | - |
| BVD85_RS04620 () | 929583..929936 | - | 354 | WP_012775123.1 | PrgI family protein | - |
| BVD85_RS04625 () | 929998..930852 | - | 855 | WP_011922462.1 | conjugal transfer protein TrbL | - |
| BVD85_RS04630 () | 930871..931113 | - | 243 | WP_001072182.1 | hypothetical protein | - |
| BVD85_RS04635 () | 931131..932948 | - | 1818 | WP_011922464.1 | type IV secretory system conjugative DNA transfer family protein | - |
| BVD85_RS04640 () | 932948..933436 | - | 489 | WP_012775124.1 | hypothetical protein | - |
| BVD85_RS04645 () | 933514..934098 | - | 585 | WP_012775125.1 | CPBP family intramembrane metalloprotease | - |
| BVD85_RS04650 () | 934101..934334 | - | 234 | WP_001005708.1 | hypothetical protein | - |
| BVD85_RS04655 () | 934343..934726 | - | 384 | WP_012775126.1 | hypothetical protein | - |
| BVD85_RS04660 () | 934737..935165 | - | 429 | WP_011922469.1 | hypothetical protein | - |
| BVD85_RS04665 () | 935149..936504 | - | 1356 | WP_011922470.1 | DNA (cytosine-5-)-methyltransferase | - |
| BVD85_RS04670 () | 936653..937471 | - | 819 | WP_011922472.1 | replication initiator protein A | - |
| BVD85_RS04675 () | 937468..937641 | - | 174 | WP_012775127.1 | hypothetical protein | - |
| BVD85_RS04680 () | 937840..938205 | - | 366 | WP_002936483.1 | 50S ribosomal protein L7/L12 | - |
| BVD85_RS04685 () | 938271..938765 | - | 495 | WP_002936486.1 | 50S ribosomal protein L10 | - |
| BVD85_RS04690 () | 939342..941435 | - | 2094 | WP_012775128.1 | type I DNA topoisomerase | - |
| BVD85_RS04695 () | 941528..942370 | - | 843 | WP_012775129.1 | DNA-processing protein DprA | - |
| BVD85_RS04700 () | 942429..942986 | - | 558 | WP_011922479.1 | sugar O-acetyltransferase | - |
| BVD85_RS04705 () | 942997..943257 | - | 261 | WP_009909865.1 | metal-sensitive transcriptional regulator | - |
| BVD85_RS04710 () | 943364..943687 | + | 324 | WP_012775130.1 | rhodanese-like domain-containing protein | - |
| BVD85_RS04715 () | 943684..945342 | + | 1659 | WP_011922481.1 | FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus suis SC84 | Integrative and Conjugative Element | TA23991, TA23992, TA23993, TA23994 | NC_012924 | 808819..964460 | 0 | |
| Streptococcus suis strain ZY05719 isolate diseased pig | Integrative and Conjugative Element | TA10053, TA46533, TA46534, TA46536 | NZ_CP007497 | 808718..964358 | 0 |