Detailed information of regulator


Summary

Regulator ID REG0365 experimental
Regulator type protein
Regulatory pathway (from literatures) Global regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00791 experimental (Type i4b)
Strain Edwardsiella tarda PPD130/91
Replicon chromosome
Sequence Protein sequence (150 a.a.); Nucleotide sequence (450 bp)
Description When culturing in DMEM, evpQ is negatively regulated by Fur and positively regulated by EsrC.
Reference

External database links

Locus tag (Gene) Y113_RS02460 (Fur)
Coordinates (Strand) 461902..462351 (+)
NCBI ID 735678383
RefSeq NZ_JACQ01000003
Uniprot ID A2TEZ4_EDWTA
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
EvpQ protein level -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
FUR PF01475.21 7.7e-49 10..130

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-149 MTDNNTALKKAGLKVTLPRLKILEVLQDPTCHHVSAEDLYKKLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSDESIEKRQREIAKKHGIQLTNHSLYLYGHCAEGDCRSDEALHDEKA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -



  Protein sequence of regulator: 150 a.a.    .

>REG0365 NZ_JACQ01000003:461902-462351 [Edwardsiella tarda PPD130/91]
MTDNNTALKKAGLKVTLPRLKILEVLQDPTCHHVSAEDLYKKLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF
ELTQQHHHDHLICLDCGKVIEFSDESIEKRQREIAKKHGIQLTNHSLYLYGHCAEGDCRSDEALHDEKA*

  Nucleotide sequence of regulator: 450 bp    .

>REG0365 NZ_JACQ01000003:461902-462351 [Edwardsiella tarda PPD130/91]
ATGACTGACAACAACACCGCGTTAAAGAAAGCTGGCCTGAAAGTCACGCTTCCCCGTCTCAAGATTCTGGAAGTACTGCA
AGATCCTACGTGCCATCACGTCAGTGCTGAAGACTTGTACAAGAAGCTGATCGACATGGGCGAGGAGATCGGTCTGGCGA
CCGTATACCGCGTGCTCAACCAGTTTGACGATGCCGGCATCGTTACCCGCCATAACTTTGAGGGCGGTAAATCGGTCTTT
GAGCTGACCCAACAGCACCACCACGATCACCTGATCTGCCTGGACTGCGGCAAGGTCATCGAGTTCAGCGATGAGTCCAT
CGAGAAGCGTCAGCGTGAAATCGCCAAAAAACACGGCATCCAGCTGACCAACCACAGCCTGTATCTCTACGGCCACTGCG
CCGAGGGCGACTGCCGCAGCGATGAGGCCCTGCACGACGAAAAGGCCTAA