Detailed information of regulator


Summary

Regulator ID REG0359 experimental
Regulator type protein
Regulatory pathway (from literatures) Global regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome
Sequence Protein sequence (467 a.a.); Nucleotide sequence (1401 bp)
Description Compared with the wild‐type 336gr‐1, ΔtssD was significantly less competent against Pantoea sp. RSPAM1. A similar competition defect was observed in ΔtepR, and the competition defect was complemented when tepR was introduced in trans.
Reference
External database links

Locus tag (Gene) bglu_1g09700 (tepR)
Coordinates (Strand) 1045102..1046502 (-)
NCBI ID -
RefSeq NC_012724
Uniprot ID -
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
Unknown ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 2.8e-45 145..320
Response_reg PF00072.26 1.8e-22 5..115
HTH_8 PF02954.21 8.8e-11 423..462
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-466 MPHALIVEDDPNSLSGLTALLAADGFTVDTATSLAEARAALARTIPDVVLVDLNLPDGSGFDLLQHLPQPQQPNGGLPVIVLTGNATVESAIEGLRYGIWDYLLKPVNIPRLRSLLARIPRPYELIEEVQALRTTLRKLGRFGPLIGRSNAVQHVYDMIERNARSEAAVLVWGEAGTGKETTARALHDLSRRRKGPFIKFDCRAALQLPRVMELGNIVIESMLFGRERGSYGGAERREPGLFEQASGGTLLLKDITALPLPIQESLLRALDSQSFRRIEGTTEVATDFRLIATSRRPSREALDHGTLREDLWMRLDAASIALPPLRARDDDMLQIAQAFVDDLNRQAHDAGLGAVAKRIAPDFIRECLAYDWPGNVRELRDRVRLAYEASGDFIESLRANDGVFVPGAALSGSSVQVRVGTPLSDVEDLLIRATLDAVGGTRHRAAALLGISPKTLYNKLQRMKMN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9512 - -


  Protein sequence of regulator: 467 a.a.    .

>REG0359 NC_012724:c1046502-1045102 [Burkholderia glumae BGR1]
MPHALIVEDDPNSLSGLTALLAADGFTVDTATSLAEARAALARTIPDVVLVDLNLPDGSGFDLLQHLPQPQQPNGGLPVI
VLTGNATVESAIEGLRYGIWDYLLKPVNIPRLRSLLARIPRPYELIEEVQALRTTLRKLGRFGPLIGRSNAVQHVYDMIE
RNARSEAAVLVWGEAGTGKETTARALHDLSRRRKGPFIKFDCRAALQLPRVMELGNIVIESMLFGRERGSYGGAERREPG
LFEQASGGTLLLKDITALPLPIQESLLRALDSQSFRRIEGTTEVATDFRLIATSRRPSREALDHGTLREDLWMRLDAASI
ALPPLRARDDDMLQIAQAFVDDLNRQAHDAGLGAVAKRIAPDFIRECLAYDWPGNVRELRDRVRLAYEASGDFIESLRAN
DGVFVPGAALSGSSVQVRVGTPLSDVEDLLIRATLDAVGGTRHRAAALLGISPKTLYNKLQRMKMN*

  Nucleotide sequence of regulator: 1401 bp    .

>REG0359 NC_012724:c1046502-1045102 [Burkholderia glumae BGR1]
ATGCCCCACGCCCTCATAGTCGAAGACGATCCCAACAGCTTGTCCGGCCTGACGGCGCTGCTCGCCGCGGACGGATTCAC
GGTCGACACGGCCACCTCGCTCGCCGAGGCCCGGGCGGCACTGGCGCGGACGATTCCCGACGTCGTGCTGGTCGACCTGA
ACCTGCCGGACGGCAGCGGCTTCGACCTGTTGCAGCATTTGCCCCAGCCGCAGCAGCCGAACGGCGGCCTGCCCGTGATC
GTGCTGACCGGCAACGCCACGGTCGAGAGCGCCATCGAGGGCTTGCGCTACGGCATTTGGGACTACCTGCTGAAGCCCGT
CAACATCCCGCGCTTGCGCAGTCTGCTGGCGCGCATTCCGCGCCCTTACGAGCTGATCGAGGAAGTCCAGGCACTGCGCA
CCACGCTGCGCAAACTCGGCCGTTTCGGCCCCCTGATCGGGCGCAGCAACGCAGTCCAGCATGTCTACGACATGATCGAG
CGCAACGCGCGCAGCGAGGCTGCGGTGCTGGTGTGGGGCGAAGCCGGCACCGGAAAGGAGACGACGGCTCGGGCGCTGCA
TGACCTGAGCCGCCGCCGCAAGGGACCGTTCATCAAGTTCGACTGCCGTGCCGCGCTGCAGCTGCCGCGCGTGATGGAAC
TCGGCAACATCGTCATCGAAAGCATGCTGTTCGGCCGCGAGCGCGGCTCCTACGGCGGCGCCGAGCGGCGCGAGCCGGGC
CTCTTCGAGCAGGCGAGCGGCGGCACGCTGCTGCTCAAGGACATCACGGCGCTGCCGCTGCCGATCCAGGAATCGCTGCT
GCGCGCGCTCGACTCGCAAAGCTTCCGGCGCATCGAGGGCACCACCGAAGTGGCCACCGACTTCCGGCTGATCGCCACCT
CGCGCCGGCCGTCGCGCGAGGCGCTCGACCACGGCACGCTGCGCGAGGATCTGTGGATGCGGCTCGACGCGGCCTCGATC
GCGCTGCCGCCGCTGCGCGCGCGCGACGACGACATGCTGCAGATCGCCCAGGCCTTCGTCGACGATCTGAACCGCCAGGC
GCACGACGCCGGCCTCGGCGCCGTCGCCAAGCGGATCGCGCCCGACTTCATTCGCGAATGCCTCGCCTACGACTGGCCAG
GCAACGTGCGCGAACTGCGCGATCGCGTGCGGCTCGCCTACGAGGCGTCGGGCGATTTCATCGAGTCGCTGCGCGCCAAC
GACGGCGTGTTCGTGCCGGGCGCGGCGCTCAGCGGCAGCAGCGTCCAGGTGCGCGTCGGCACGCCGCTGTCGGACGTGGA
AGACCTGTTGATCCGCGCCACGCTCGACGCGGTCGGCGGCACCCGCCATCGCGCGGCCGCGCTGCTCGGCATCAGCCCGA
AGACGCTCTACAACAAGCTGCAGCGCATGAAGATGAACTGA