Detailed information of regulator


Summary

Regulator ID REG0277 experimental
Regulator type protein
Regulatory pathway (from literatures) Transcription regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (197 a.a.); Nucleotide sequence (591 bp)
Description TfoY is a universal T6SS inducer in V. alginolyticus
Reference
External database links

Locus tag (Gene) V12G01_20658 (TfoY)
Coordinates (Strand) 21665..22255 (+)
NCBI ID 91188194
GenBank AAPS01000039
Uniprot ID UPI0000D542E8
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
T6SS transcripts ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
TfoX_C PF04994.15 1.8e-30 115..193
TfoX_N PF04993.15 2.7e-29 12..103
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-196 MDKPILKDSMKLFEALGNIKSRSMFGGFGLFADETMFALVVNNQLHIRADQKTSSDFEKQGLKPYVYKKRGFPVVTKYYAISSDLWESSERLIEVANQSLKKAKLEKEQQASTKPNRLKDLPNLRLATERMLKKAGIESVEKLEEEGALNAYKAIRDTHSATVNIELLWALEGAINGTHWSVVPQARRDELMNGLQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9785 - -


  Protein sequence of regulator: 197 a.a.    .

>REG0277 AAPS01000039:21665-22255 [Vibrio alginolyticus 12G01]
MDKPILKDSMKLFEALGNIKSRSMFGGFGLFADETMFALVVNNQLHIRADQKTSSDFEKQGLKPYVYKKRGFPVVTKYYA
ISSDLWESSERLIEVANQSLKKAKLEKEQQASTKPNRLKDLPNLRLATERMLKKAGIESVEKLEEEGALNAYKAIRDTHS
ATVNIELLWALEGAINGTHWSVVPQARRDELMNGLQ*

  Nucleotide sequence of regulator: 591 bp    .

>REG0277 AAPS01000039:21665-22255 [Vibrio alginolyticus 12G01]
ATGGATAAACCGATACTCAAAGACTCTATGAAGCTATTTGAGGCACTTGGTAATATCAAGTCGCGCTCAATGTTTGGTGG
CTTCGGACTATTCGCTGATGAAACAATGTTTGCACTAGTGGTAAACAATCAGCTTCATATCAGAGCAGACCAAAAAACTT
CATCTGACTTCGAGAAACAAGGGCTAAAGCCTTACGTTTATAAAAAACGTGGCTTTCCAGTCGTTACAAAGTACTACGCT
ATTTCCAGCGATTTATGGGAATCAAGCGAACGCTTAATCGAAGTAGCGAATCAATCATTGAAAAAGGCAAAGCTTGAGAA
AGAACAGCAAGCAAGTACAAAGCCTAACCGTTTGAAAGATTTGCCTAACTTACGACTGGCTACCGAGCGCATGCTAAAAA
AAGCCGGCATCGAATCCGTAGAGAAGCTTGAAGAGGAAGGTGCGCTTAACGCCTATAAAGCGATAAGAGATACGCACTCT
GCAACCGTCAACATTGAGTTGCTATGGGCACTAGAAGGTGCTATCAACGGCACTCATTGGAGTGTGGTACCTCAAGCTCG
CCGAGATGAGTTGATGAACGGCCTCCAATAA