Detailed information of regulator


Summary

Regulator ID REG0276 experimental
Regulator type protein
Regulatory pathway (from literatures) Transcription regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (196 a.a.); Nucleotide sequence (588 bp)
Description TfoX specificly regulates T6SS2
Reference
External database links

Locus tag (Gene) V12G01_19736 (TfoX)
Coordinates (Strand) 47689..48276 (-)
NCBI ID 91189146
GenBank AAPS01000019
Uniprot ID UPI0000D528D7
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
T6SS2 transcripts ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
TfoX_C PF04994.15 2e-26 114..192
TfoX_N PF04993.15 1.4e-21 11..100
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-195 MDMTDQAFFKYVRTFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLSCEKYKHVKKQTTATVNYYDVTDLFESGYVGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKTAYGNDVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9764 - -


  Protein sequence of regulator: 196 a.a.    .

>REG0276 AAPS01000019:c48276-47689 [Vibrio alginolyticus 12G01]
MDMTDQAFFKYVRTFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLSCEKYKHVKKQTTATVNYYDV
TDLFESGYVGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKTAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCD*

  Nucleotide sequence of regulator: 588 bp    .

>REG0276 AAPS01000019:c48276-47689 [Vibrio alginolyticus 12G01]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCACCTTCAGTGAGTACCAAAAACGTTCTATGTTCGGTGGTAT
TGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGGCTAGATG
AAGTGTTTACTCAACTGAGCTGTGAGAAGTATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACCGATTTATTCGAATCCGGATATGTAGGGCTTGATGAACTGGTACAGAAATCAATTGAATACTCAATTAAGGAACGGAA
ATATCAAAAGTCCTCTGCCAGTAGACGCTTAAGAGACTTACCCAACATGCAACTAACCCTTGAACGTATGGTCAAGAAAG
CCGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAACGGCTTACGGTAAT
GATGTTGATGTAAAGCTACTGTGGAAATTTGCTGGTGCAACTGATGGCGTACATTGGAAACTGATCCAAGAGCCGCGTAA
AAAACAGTTATTGGCACTGTGTGACTAA