Detailed information of regulator
Summary
| Regulator ID | REG0255  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | QS regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00788 (Type i1) |
| Strain | Aeromonas dhakensis strain SSU |
| Replicon | chromosome |
| Sequence | Protein sequence (208 a.a.); Nucleotide sequence (624 bp) |
| Description | A LuxRI homologue was identified in A. hydrophila A1 strain and designated AhyRI (GenBank accession no. X89469). By our sequence annotation of A. hydrophila ATCC 7966, we identified ahyR and ahyI genes in a clinical isolate, A. hydrophila SSU, which had a 97 and 94 % sequence homology with the corresponding genes of the A. hydrophila A1 strain, respectively. |
| Reference |
External database links
| Locus tag (Gene) | HMPREF1171_RS20340 |
| Coordinates (Strand) | 4528194..4528817 (-) |
| NCBI ID | WP_005308454.1 |
| RefSeq | NZ_JH815591 |
| Uniprot ID | K1J2K7_9GAMM, Q27IV3_AERHY |
| KEGG ID | - |
| KEGG pathway (determined by BlastKOALA) | - |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| ahyR | ↓ | - |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Autoind_synth | PF00765.19 | 1.6e-31 | 18..168 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-207 | MLVFKGKLKEHPRWEVENELYRFRNRVFSDRLGWDVESHRGLEQDSFDTPDTHWVLIEDDSGLCGCIRLLSCAQDYMLPSIFPTALAGEAPPRSNDVWELTRLAIDAERAPRLGNGVSELTCVIFREVYAFARAKGIRELVAVVSLPVERIFRRLGLPIERLGHRQAVDLGAVRGVGIRFHLDERFARAVGQPLQGAYDEARELVTE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9910 | - | - |
Protein sequence of regulator: 208 a.a. .
>REG0255 NZ_JH815591:c4528817-4528194 [Aeromonas dhakensis]
MLVFKGKLKEHPRWEVENELYRFRNRVFSDRLGWDVESHRGLEQDSFDTPDTHWVLIEDDSGLCGCIRLLSCAQDYMLPS
IFPTALAGEAPPRSNDVWELTRLAIDAERAPRLGNGVSELTCVIFREVYAFARAKGIRELVAVVSLPVERIFRRLGLPIE
RLGHRQAVDLGAVRGVGIRFHLDERFARAVGQPLQGAYDEARELVTE*
MLVFKGKLKEHPRWEVENELYRFRNRVFSDRLGWDVESHRGLEQDSFDTPDTHWVLIEDDSGLCGCIRLLSCAQDYMLPS
IFPTALAGEAPPRSNDVWELTRLAIDAERAPRLGNGVSELTCVIFREVYAFARAKGIRELVAVVSLPVERIFRRLGLPIE
RLGHRQAVDLGAVRGVGIRFHLDERFARAVGQPLQGAYDEARELVTE*
Nucleotide sequence of regulator: 624 bp .
>REG0255 NZ_JH815591:c4528817-4528194 [Aeromonas dhakensis]
ATGCTTGTTTTCAAAGGAAAATTAAAAGAACACCCCAGATGGGAGGTAGAAAACGAGCTTTATCGCTTTCGCAATCGCGT
CTTCTCCGATCGCCTCGGCTGGGATGTGGAATCTCACCGTGGTCTGGAGCAGGACAGTTTCGATACTCCGGACACCCACT
GGGTTCTGATTGAAGACGACTCAGGCCTGTGCGGCTGCATTCGTCTGCTCAGTTGTGCCCAGGATTACATGCTGCCCAGC
ATCTTCCCCACCGCCCTCGCCGGCGAAGCCCCACCACGCAGCAACGACGTGTGGGAACTGACCCGCCTCGCCATCGATGC
CGAACGGGCGCCGCGCCTGGGCAACGGGGTCAGCGAGCTGACCTGCGTCATCTTCCGCGAGGTCTATGCCTTCGCCAGGG
CGAAGGGGATCCGCGAGCTGGTTGCCGTGGTCAGCCTGCCGGTAGAGCGGATCTTCCGCCGCCTCGGCCTGCCCATCGAG
CGGCTCGGTCACCGCCAGGCGGTGGATCTGGGCGCCGTGCGCGGGGTGGGGATCCGCTTCCATCTGGACGAGCGTTTCGC
CCGTGCCGTCGGTCAGCCCCTGCAGGGTGCCTATGACGAAGCCCGCGAGCTGGTCACCGAATAA
ATGCTTGTTTTCAAAGGAAAATTAAAAGAACACCCCAGATGGGAGGTAGAAAACGAGCTTTATCGCTTTCGCAATCGCGT
CTTCTCCGATCGCCTCGGCTGGGATGTGGAATCTCACCGTGGTCTGGAGCAGGACAGTTTCGATACTCCGGACACCCACT
GGGTTCTGATTGAAGACGACTCAGGCCTGTGCGGCTGCATTCGTCTGCTCAGTTGTGCCCAGGATTACATGCTGCCCAGC
ATCTTCCCCACCGCCCTCGCCGGCGAAGCCCCACCACGCAGCAACGACGTGTGGGAACTGACCCGCCTCGCCATCGATGC
CGAACGGGCGCCGCGCCTGGGCAACGGGGTCAGCGAGCTGACCTGCGTCATCTTCCGCGAGGTCTATGCCTTCGCCAGGG
CGAAGGGGATCCGCGAGCTGGTTGCCGTGGTCAGCCTGCCGGTAGAGCGGATCTTCCGCCGCCTCGGCCTGCCCATCGAG
CGGCTCGGTCACCGCCAGGCGGTGGATCTGGGCGCCGTGCGCGGGGTGGGGATCCGCTTCCATCTGGACGAGCGTTTCGC
CCGTGCCGTCGGTCAGCCCCTGCAGGGTGCCTATGACGAAGCCCGCGAGCTGGTCACCGAATAA