Detailed information of regulator
|Regulatory pathway (from literatures)||Global regulator|
|KEGG pathway (determined by BlastKOALA)||-|
|Related T6SS||T6SS00464 (Type i4b)|
|Strain||Escherichia coli 042|
|Sequence||Protein sequence (138 a.a.); Nucleotide sequence (414 bp)|
|Description||PaggR::lacZ reporter plasmids were introduced into an E. coli K12 hns mutant in the presence (pBADaggR) and in the absence (pBAD33) of AggR and further analysis suggested that the H-NS-dependent zone of repression lies downstream of the transcription start site (+114 to +290) as deletion of this DNA fragment eliminated dependence on H-NS.|
External database links
|Target||Regulation (↓/↑)||Target sequence|
|EC042_RS26480 (aggR) promoter||↑||ATTAACAAACGTATTTTATATGAGTTAAAAATATATCTTTTTATTGATAAGAGTTAGGTCATTCTAACGCAGATTGCCTGATAAAGACATTTTTTTCATGTGAGAATGATATGAAATTAAAACAAAACATCGAAAAAGA|
Pfam domain hit(s) of regulator
|Domain||Pfam ID||E-value||Aligned region|
- Transmembrane helices are predicted using TMHMM 2.0 software.
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
|Prediction||Probability||Cleavage site||Signal peptide sequence|
Protein sequence of regulator: 138 a.a. .
Nucleotide sequence of regulator: 414 bp .