Detailed information of regulator
Summary
| Regulator ID | REG0240  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | TCS regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | Ribosome (map03010) |
| Related T6SS | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (129 a.a.); Nucleotide sequence (387 bp) |
| Description | Putative activators of esrB as identified by Tn-seq. |
| Reference |
External database links
| Locus tag (Gene) | ETAE_3207 (rplQ) |
| Coordinates (Strand) | 3390207..3390593 (-) |
| NCBI ID | 491439763 |
| RefSeq | NC_013508 |
| Uniprot ID | D0ZFU0_EDWTE, A0A2A7TZP8_EDWTA, A0A0H3DTZ9_EDWTF |
| KEGG ID | etr:ETAE_3207, etd:ETAF_2895 |
| KEGG pathway (determined by BlastKOALA) | map03010 |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| ETAE_0886 (esrB) promoter | ↓ | - |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Ribosomal_L17 | PF01196.21 | 1.1e-35 | 20..116 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-128 | MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSVSEAEAAAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9420 | - | - |
Protein sequence of regulator: 129 a.a. .
>REG0240 NC_013508:c3390593-3390207 [Edwardsiella tarda EIB202]
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF
NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSVSEAEAAAE*
MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF
NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSVSEAEAAAE*
Nucleotide sequence of regulator: 387 bp .
>REG0240 NC_013508:c3390593-3390207 [Edwardsiella tarda EIB202]
ATGCGCCATCGTAAGAGTGGTCGTCAACTGAACCGCAACAGCAGCCATCGCCAGGCTATGTTCCGCAACATGGCCGGTTC
TCTGGTTCGTCATGAGATCATCAAGACGACCCTGCCGAAAGCGAAAGAGCTGCGTCGCGTGGTTGAGCCGCTGATTACTC
TTGCCAAGACCGACAGCGTTGCTAACCGTCGTCTGGCATTCGCCCGTACTCGTGATAACGAGATCGTGGCAAAACTGTTT
AACGAGCTGGGCCCGCGCTTCGCGAGCCGTGCCGGTGGCTACACTCGCATTCTGAAGTGTGGCTTCCGTGCAGGCGACAA
CGCGCCGATGGCTTACATCGAGCTGGTTGATCGTTCTGTATCTGAAGCAGAAGCTGCAGCAGAGTAA
ATGCGCCATCGTAAGAGTGGTCGTCAACTGAACCGCAACAGCAGCCATCGCCAGGCTATGTTCCGCAACATGGCCGGTTC
TCTGGTTCGTCATGAGATCATCAAGACGACCCTGCCGAAAGCGAAAGAGCTGCGTCGCGTGGTTGAGCCGCTGATTACTC
TTGCCAAGACCGACAGCGTTGCTAACCGTCGTCTGGCATTCGCCCGTACTCGTGATAACGAGATCGTGGCAAAACTGTTT
AACGAGCTGGGCCCGCGCTTCGCGAGCCGTGCCGGTGGCTACACTCGCATTCTGAAGTGTGGCTTCCGTGCAGGCGACAA
CGCGCCGATGGCTTACATCGAGCTGGTTGATCGTTCTGTATCTGAAGCAGAAGCTGCAGCAGAGTAA