Detailed information of regulator
Summary
| Regulator ID | REG0234  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | TCS regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (48 a.a.); Nucleotide sequence (144 bp) |
| Description | Putative activators of esrB as identified by Tn-seq. |
| Reference |
External database links
| Locus tag (Gene) | ETAE_1170 |
| Coordinates (Strand) | 1271304..1271447 (-) |
| NCBI ID | 267984186 |
| GenBank | CP001135 |
| Uniprot ID | D0ZFI3_EDWTE |
| KEGG ID | etr:ETAE_1170 |
| KEGG pathway (determined by BlastKOALA) | - |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| ETAE_0886 (esrB) promoter | ↓ | - |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-20 | MTATNYNKLEYTCKNNDSMM |
| Transmembrane helix | 21-38 | FGFNFVLLFINTVSSKQF |
| Outside | 39-47 | SSCRDPGRM |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9279 | - | - |
Protein sequence of regulator: 48 a.a. .
>REG0234 CP001135:c1271447-1271304 [Edwardsiella tarda EIB202]
MTATNYNKLEYTCKNNDSMMFGFNFVLLFINTVSSKQFSSCRDPGRM*
MTATNYNKLEYTCKNNDSMMFGFNFVLLFINTVSSKQFSSCRDPGRM*
Nucleotide sequence of regulator: 144 bp .
>REG0234 CP001135:c1271447-1271304 [Edwardsiella tarda EIB202]
ATGACTGCAACAAATTATAATAAGTTGGAATATACCTGTAAAAATAACGATAGCATGATGTTTGGATTCAATTTTGTCCT
ATTATTTATAAATACTGTTTCTTCTAAACAATTTTCTTCTTGTAGAGATCCTGGTCGCATGTGA
ATGACTGCAACAAATTATAATAAGTTGGAATATACCTGTAAAAATAACGATAGCATGATGTTTGGATTCAATTTTGTCCT
ATTATTTATAAATACTGTTTCTTCTAAACAATTTTCTTCTTGTAGAGATCCTGGTCGCATGTGA