Detailed information of regulator


Summary

Regulator ID REG0234 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (48 a.a.); Nucleotide sequence (144 bp)
Description Putative activators of esrB as identified by Tn-seq.
Reference

External database links

Locus tag (Gene) ETAE_1170
Coordinates (Strand) 1271304..1271447 (-)
NCBI ID 267984186
GenBank CP001135
Uniprot ID D0ZFI3_EDWTE
KEGG ID etr:ETAE_1170
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-20 MTATNYNKLEYTCKNNDSMM
Transmembrane helix 21-38 FGFNFVLLFINTVSSKQF
Outside 39-47 SSCRDPGRM



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9279 - -



  Protein sequence of regulator: 48 a.a.    .

>REG0234 CP001135:c1271447-1271304 [Edwardsiella tarda EIB202]
MTATNYNKLEYTCKNNDSMMFGFNFVLLFINTVSSKQFSSCRDPGRM*

  Nucleotide sequence of regulator: 144 bp    .

>REG0234 CP001135:c1271447-1271304 [Edwardsiella tarda EIB202]
ATGACTGCAACAAATTATAATAAGTTGGAATATACCTGTAAAAATAACGATAGCATGATGTTTGGATTCAATTTTGTCCT
ATTATTTATAAATACTGTTTCTTCTAAACAATTTTCTTCTTGTAGAGATCCTGGTCGCATGTGA