Detailed information of regulator


Summary

Regulator ID REG0230 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (681 a.a.); Nucleotide sequence (2043 bp)
Description Putative activators of esrB as identified by Tn-seq.
Reference
External database links

Locus tag (Gene) ETAE_1655 (prc)
Coordinates (Strand) 1757898..1759940 (+)
NCBI ID 735677771
RefSeq NC_013508
Uniprot ID UPI00030B4624
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
TSP_NTD PF17804.3 4.1e-58 49..232
Peptidase_S41 PF03572.20 1.9e-52 357..530
DUF3340 PF11818.10 8.1e-39 535..667
PDZ PF00595.26 2.8e-14 242..321
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-680 MNNFFRVSAIALSLFAGTVFAADDAVSGAVQLPQLHQEPQHATVSERVTARFTRSHYRQFDLNADFSKKIFNRYLNMLDYNHNVFLASDIARFRDREGKLGDELRSGQLDTAYALFNLSQQRRLERYEYALTLLKKPMSFDGSDTIDVDRSKAPWPTSVAELDKLWYAKVKYDALNLKLAGKDWPEIQKILTKRYQFAIKRLTQGNSEDVFQLFMNAFAREIDPHTSYLSPRNTEQFNTDMSLSLEGIGAVLQQTEDDYTQINSLVAGGPAAKSKVLKVGDRIVAVGQPGKAMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRERIRLEDRAVKMSVKTVDGHKIGVLDIPGFYVGLTEDVKVQLQKLEKQHVSAIVIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNVGKVREDDDTDGVVYYKGPLVVLVDRFSASASEIFAAAMQDYDRALIVGEPTFGKGTVQQYRSVNRIYDQMLRPEWPDLGSVQYTIQKFYRINGGSTQRKGVTPDIVMPTGIDPADTGESFEDNALPWDSINAAAYNKAGDVQRFDPQLIVLHDARIAKDPEFQYIEQDIAHYKALKARRNIVSLNYAQREKENKDDDAIRLQRINARLKLEGKKPIASLDDIPKDYQEPDPYLNETVKIAEDLALLEQKNAQQAQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9969 pos: 21-22. VFA-AD. MNNFFRVSAIALSLFAGTVFA


  Protein sequence of regulator: 681 a.a.    .

>REG0230 NC_013508:1757898-1759940 [Edwardsiella tarda EIB202]
MNNFFRVSAIALSLFAGTVFAADDAVSGAVQLPQLHQEPQHATVSERVTARFTRSHYRQFDLNADFSKKIFNRYLNMLDY
NHNVFLASDIARFRDREGKLGDELRSGQLDTAYALFNLSQQRRLERYEYALTLLKKPMSFDGSDTIDVDRSKAPWPTSVA
ELDKLWYAKVKYDALNLKLAGKDWPEIQKILTKRYQFAIKRLTQGNSEDVFQLFMNAFAREIDPHTSYLSPRNTEQFNTD
MSLSLEGIGAVLQQTEDDYTQINSLVAGGPAAKSKVLKVGDRIVAVGQPGKAMVDVIGWRLDDVVALIKGPKGSKVRLEI
LPAGKGTKTRIVTLTRERIRLEDRAVKMSVKTVDGHKIGVLDIPGFYVGLTEDVKVQLQKLEKQHVSAIVIDLRGNGGGA
LTEAVSLSGLFIPSGPVVQVRDNVGKVREDDDTDGVVYYKGPLVVLVDRFSASASEIFAAAMQDYDRALIVGEPTFGKGT
VQQYRSVNRIYDQMLRPEWPDLGSVQYTIQKFYRINGGSTQRKGVTPDIVMPTGIDPADTGESFEDNALPWDSINAAAYN
KAGDVQRFDPQLIVLHDARIAKDPEFQYIEQDIAHYKALKARRNIVSLNYAQREKENKDDDAIRLQRINARLKLEGKKPI
ASLDDIPKDYQEPDPYLNETVKIAEDLALLEQKNAQQAQE*

  Nucleotide sequence of regulator: 2043 bp    .

>REG0230 NC_013508:1757898-1759940 [Edwardsiella tarda EIB202]
ATGAACAATTTTTTCCGGGTATCGGCAATCGCCCTGTCGCTGTTTGCAGGTACCGTTTTTGCAGCGGATGACGCCGTCAG
CGGCGCCGTCCAGCTGCCCCAGTTGCATCAGGAACCTCAGCATGCAACGGTCAGTGAACGTGTGACCGCACGTTTCACCC
GCTCCCATTACCGCCAGTTTGACCTCAACGCAGACTTCTCGAAGAAAATCTTCAACCGCTACCTGAACATGCTGGACTAT
AACCACAACGTGTTTCTGGCATCGGATATCGCCCGCTTCCGCGATCGCGAAGGCAAGCTGGGCGATGAGCTGCGCAGCGG
TCAGCTGGATACGGCCTATGCGCTGTTTAACCTGTCTCAGCAGCGCCGCCTGGAGCGTTATGAGTACGCCCTGACGCTGC
TGAAAAAGCCGATGAGCTTTGACGGCAGCGACACCATCGACGTCGATCGCAGCAAGGCGCCGTGGCCGACCAGCGTCGCC
GAGCTGGACAAGCTCTGGTACGCCAAGGTGAAGTATGACGCACTGAACCTGAAGCTGGCCGGTAAGGACTGGCCGGAGAT
CCAGAAGATCCTGACCAAACGCTATCAGTTCGCCATTAAGCGCCTGACCCAGGGCAACAGCGAGGATGTCTTCCAGCTGT
TTATGAATGCGTTTGCCCGAGAGATCGATCCCCATACCAGCTACCTGTCGCCGCGCAATACCGAGCAGTTCAATACGGAC
ATGAGTCTGTCGCTGGAGGGCATCGGCGCGGTGCTGCAGCAGACAGAGGATGACTACACCCAGATTAACTCTCTGGTGGC
CGGCGGTCCGGCGGCCAAGAGCAAGGTGCTGAAGGTGGGCGATCGCATCGTGGCGGTCGGCCAGCCGGGTAAGGCGATGG
TCGATGTGATCGGCTGGCGTCTGGACGACGTGGTCGCCCTGATCAAAGGGCCGAAGGGCAGCAAGGTGCGCCTGGAGATC
CTGCCGGCGGGTAAAGGAACCAAAACCCGTATCGTCACCCTGACCCGCGAACGTATCCGCCTGGAAGATCGCGCCGTGAA
GATGAGTGTCAAAACGGTGGATGGCCATAAAATCGGCGTGTTGGATATTCCCGGCTTCTACGTCGGCCTGACGGAGGACG
TCAAGGTTCAGCTGCAGAAGCTGGAGAAACAGCACGTGAGCGCCATCGTCATCGATCTGCGCGGCAACGGGGGCGGTGCC
CTGACAGAGGCCGTGTCCCTGTCGGGTCTGTTTATTCCCAGCGGGCCGGTGGTGCAGGTGCGCGATAACGTCGGCAAGGT
GCGTGAGGATGACGATACCGACGGCGTTGTCTACTACAAAGGACCGCTGGTGGTGCTGGTCGATCGCTTTAGCGCCTCGG
CATCCGAGATTTTCGCCGCCGCCATGCAGGACTACGATCGCGCCCTGATCGTGGGTGAACCCACCTTCGGCAAGGGAACG
GTACAGCAGTACCGCTCAGTGAACCGCATTTACGATCAGATGCTGCGTCCAGAGTGGCCGGATCTGGGTTCGGTGCAGTA
CACCATCCAGAAGTTTTACCGCATCAACGGCGGCAGCACCCAGCGCAAAGGGGTGACGCCGGACATCGTGATGCCGACCG
GTATCGATCCGGCGGACACCGGCGAGAGCTTTGAGGATAACGCGCTGCCGTGGGATAGCATCAACGCCGCCGCCTATAAT
AAGGCTGGCGATGTACAGCGCTTTGATCCGCAGCTGATCGTGCTACACGATGCGCGCATCGCCAAAGATCCCGAGTTCCA
GTACATCGAACAGGATATTGCCCACTACAAGGCGCTCAAGGCGCGCCGTAACATTGTCTCTCTGAACTACGCTCAGCGTG
AAAAGGAGAACAAGGACGACGACGCGATTCGCCTGCAGCGGATCAACGCCCGGCTGAAGCTGGAGGGCAAGAAGCCGATC
GCCTCGCTGGATGATATTCCTAAGGATTATCAGGAGCCGGATCCCTACCTGAATGAGACGGTGAAAATCGCCGAAGATCT
GGCCCTGCTGGAGCAGAAAAACGCACAGCAGGCTCAGGAGTAG