Detailed information of regulator


Summary

Regulator ID REG0228 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (244 a.a.); Nucleotide sequence (732 bp)
Description Putative activators of esrB as identified by Tn-seq.
Reference
External database links

Locus tag (Gene) ETAE_3542 (phoU)
Coordinates (Strand) 3747537..3748268 (+)
NCBI ID 502613380
RefSeq NC_013508
Uniprot ID D0ZHI0_EDWTE, PHOU_EDWTA, A0A0H3DXA7_EDWTF
KEGG ID etr:ETAE_3542, etd:ETAF_3202
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
PhoU PF01895.21 5.3e-21 26..111
PhoU PF01895.21 3.6e-17 128..212
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-243 MDNLNLNKHTSGQFNAELEYIRTQVMSMGGLVEQQLTDAITAMHNQDADLARRVVEGDAKVNMMEIAIDEACVKIIAKRQPTASDLRLVMAIIKTISELERIGDVADKICRTALEKFSQQHQPLLVSLESLGQHTVQMLHDVLDAFARMDLNEAIRIYREDKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRHIGGDDLEQLLTDHRRVDEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9952 - -


  Protein sequence of regulator: 244 a.a.    .

>REG0228 NC_013508:3747537-3748268 [Edwardsiella tarda EIB202]
MDNLNLNKHTSGQFNAELEYIRTQVMSMGGLVEQQLTDAITAMHNQDADLARRVVEGDAKVNMMEIAIDEACVKIIAKRQ
PTASDLRLVMAIIKTISELERIGDVADKICRTALEKFSQQHQPLLVSLESLGQHTVQMLHDVLDAFARMDLNEAIRIYRE
DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRHIGGDDLEQLLTDHRRV
DEA*

  Nucleotide sequence of regulator: 732 bp    .

>REG0228 NC_013508:3747537-3748268 [Edwardsiella tarda EIB202]
ATGGATAATCTGAATTTAAACAAGCACACCTCCGGTCAGTTTAATGCCGAGCTTGAATATATCCGCACCCAGGTAATGAG
CATGGGCGGGCTGGTAGAGCAGCAGCTGACGGATGCGATCACCGCCATGCATAACCAGGATGCCGATCTGGCGCGCCGGG
TGGTCGAGGGGGATGCCAAGGTCAACATGATGGAGATCGCCATCGATGAGGCCTGCGTTAAAATTATTGCCAAGCGTCAG
CCTACCGCCAGCGATCTGCGCCTGGTGATGGCGATTATCAAAACGATCTCCGAGCTGGAGCGCATTGGTGACGTTGCGGA
TAAAATCTGCCGCACCGCGCTGGAGAAGTTCTCCCAGCAGCATCAGCCGCTGCTGGTTAGCCTGGAGTCCCTGGGACAGC
ATACCGTGCAGATGCTGCACGATGTGCTGGATGCCTTTGCGCGCATGGATCTGAATGAAGCCATCCGGATTTATCGTGAA
GATAAGAAGGTCGATCAGGAGTATGAAGGCATTGTGCGTCAGCTGATGACCTACATGATGGAGGACTCGCGTACCATTCC
CAGCGTATTGACGGCGCTGTTCTGCGCCCGCTCTATCGAGCGCATCGGCGATCGCTGCCAGAATATCTGCGAGTTTATTT
TCTACTACGTCAAAGGGCAGGATTTCCGCCATATCGGCGGGGACGATCTGGAACAGCTGCTGACAGATCATCGCCGGGTG
GACGAGGCATAA