Detailed information of regulator


Summary

Regulator ID REG0219 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (108 a.a.); Nucleotide sequence (324 bp)
Description Putative repressors of esrB as identified by Tn-seq.
Reference

External database links

Locus tag (Gene) ETAE_2813 (iscA)
Coordinates (Strand) 2952011..2952334 (-)
NCBI ID 491431780
RefSeq NC_013508
Uniprot ID A0A034T030_9GAMM, D0ZD84_EDWTE, D4F959_EDWTA, A0A2A7U0J8_EDWTA, A0A076LLA6_9GAMM, A0A0H3DVW2_EDWTF
KEGG ID ete:ETEE_1033, etd:ETAF_2552, etr:ETAE_2813
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Fe-S_biosyn PF01521.22 4.7e-26 1..103

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-107 MSITMSDSAAKRVQTFLTNRGKGLGLRLGVKTSGCSGMAYVLEFVDVLNEDDVVFEDKGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVKNECGCGESFNV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9294 - -



  Protein sequence of regulator: 108 a.a.    .

>REG0219 NC_013508:c2952334-2952011 [Edwardsiella tarda EIB202]
MSITMSDSAAKRVQTFLTNRGKGLGLRLGVKTSGCSGMAYVLEFVDVLNEDDVVFEDKGVKVIVDGKSLVYLDGTELDFV
KEGLNEGFKFNNPNVKNECGCGESFNV*

  Nucleotide sequence of regulator: 324 bp    .

>REG0219 NC_013508:c2952334-2952011 [Edwardsiella tarda EIB202]
ATGTCGATTACCATGAGCGACTCCGCTGCAAAGCGCGTACAGACATTTTTAACCAATCGCGGTAAGGGATTGGGCCTGCG
TCTGGGGGTAAAAACCTCGGGCTGTTCGGGCATGGCGTATGTGCTGGAGTTTGTCGATGTCCTGAACGAGGACGATGTGG
TTTTCGAGGATAAAGGGGTGAAGGTCATCGTTGACGGAAAGAGCCTGGTGTACCTCGACGGTACCGAGCTGGATTTCGTT
AAAGAGGGCCTGAACGAAGGCTTTAAGTTCAACAACCCGAACGTTAAGAATGAGTGCGGCTGCGGCGAGAGCTTTAACGT
TTAA