Detailed information of regulator
Summary
| Regulator ID | REG0213  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | TCS regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (53 a.a.); Nucleotide sequence (159 bp) |
| Description | Putative repressors of esrB as identified by Tn-seq. |
| Reference |
External database links
| Locus tag (Gene) | ETAE_1760 |
| Coordinates (Strand) | 1870377..1870535 (+) |
| NCBI ID | 267984768 |
| GenBank | CP001135 |
| Uniprot ID | D0Z828_EDWTE |
| KEGG ID | etr:ETAE_1760 |
| KEGG pathway (determined by BlastKOALA) | - |
| PDB ID | - |
Target
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Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| ETAE_0886 (esrB) promoter | ↑ | - |
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Pfam domain hit(s) of regulator
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Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| No matching records found | |||
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
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Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-52 | MLAVVMLDSRLPNRQRLKALEREVRERRRSNDILRQTSAYFAKAEFDRLWKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9827 | - | - |
Protein sequence of regulator: 53 a.a. .
>REG0213 CP001135:1870377-1870535 [Edwardsiella tarda EIB202]
MLAVVMLDSRLPNRQRLKALEREVRERRRSNDILRQTSAYFAKAEFDRLWKK*
MLAVVMLDSRLPNRQRLKALEREVRERRRSNDILRQTSAYFAKAEFDRLWKK*
Nucleotide sequence of regulator: 159 bp .
>REG0213 CP001135:1870377-1870535 [Edwardsiella tarda EIB202]
ATGTTGGCGGTGGTGATGCTGGACTCAAGACTGCCGAACCGCCAACGGCTGAAGGCGTTGGAGCGGGAGGTTAGAGAACG
TCGACGCAGCAACGATATCCTGCGGCAGACCTCTGCTTATTTTGCGAAGGCGGAGTTCGACCGTCTGTGGAAAAAATAA
ATGTTGGCGGTGGTGATGCTGGACTCAAGACTGCCGAACCGCCAACGGCTGAAGGCGTTGGAGCGGGAGGTTAGAGAACG
TCGACGCAGCAACGATATCCTGCGGCAGACCTCTGCTTATTTTGCGAAGGCGGAGTTCGACCGTCTGTGGAAAAAATAA