Detailed information of regulator


Summary

Regulator ID REG0212 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) Aminoacyl-tRNA biosynthesis (map00970)
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (462 a.a.); Nucleotide sequence (1386 bp)
Description Putative repressors of esrB as identified by Tn-seq.
Reference
External database links

Locus tag (Gene) ETAE_2697 (cysS)
Coordinates (Strand) 2831230..2832615 (-)
NCBI ID 502612557
RefSeq NC_013508
Uniprot ID D0ZCJ3_EDWTE, A0A0H3DV59_EDWTF
KEGG ID etd:ETAF_2430, etr:ETAE_2697
KEGG pathway (determined by BlastKOALA) map00970
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter ↑ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
tRNA-synt_1e PF01406.21 2.6e-142 15..313
DALR_2 PF09190.13 5.9e-25 341..402
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-461 MLKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYLGYRLKYVRNVTDVDDKIIKRALENKESCEQLTERMLAEMHRDFDALNIARPDVEPRATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDLEQLQAGARVEVADVKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFPHHENEIAQSTCAHDGAYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLAHYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDAAAQPAADETFTARFRAAMDDDFNTPEAYSVLFDMAREINRLKGEDMAQASALAAQMRGLAHVLGLLEQTPEHFLQSGAAAGDDEVAQIEALIKQRNDARAAKAWALADEARDSLNAMGIVLEDGPQGTTWRRK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -


  Protein sequence of regulator: 462 a.a.    .

>REG0212 NC_013508:c2832615-2831230 [Edwardsiella tarda EIB202]
MLKIFNTLSRQKEEFKPIHAGEVGMYVCGVTIYDLCHIGHGRTFVCFDVVARYLRYLGYRLKYVRNVTDVDDKIIKRALE
NKESCEQLTERMLAEMHRDFDALNIARPDVEPRATHHIAEIIALVEQLIARDHAYVASNGDVMFAVDTDPDYGVLSRQDL
EQLQAGARVEVADVKRNPMDFVLWKMSKPGEPSWPSPWGEGRPGWHIECSAMNCKQLGAHFDIHGGGSDLMFPHHENEIA
QSTCAHDGAYVNYWMHSGMVMIDREKMSKSLGNFFTIRDVLAHYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLY
TALRGTDAAAQPAADETFTARFRAAMDDDFNTPEAYSVLFDMAREINRLKGEDMAQASALAAQMRGLAHVLGLLEQTPEH
FLQSGAAAGDDEVAQIEALIKQRNDARAAKAWALADEARDSLNAMGIVLEDGPQGTTWRRK*

  Nucleotide sequence of regulator: 1386 bp    .

>REG0212 NC_013508:c2832615-2831230 [Edwardsiella tarda EIB202]
ATGCTTAAAATCTTTAATACACTCAGTCGCCAGAAAGAGGAATTTAAACCCATCCATGCCGGTGAAGTCGGTATGTATGT
GTGTGGGGTAACCATTTACGACCTGTGTCACATCGGTCACGGCCGAACCTTTGTCTGTTTCGACGTGGTGGCCCGCTACC
TGCGCTACCTGGGCTACAGGTTGAAGTATGTGCGTAACGTGACCGACGTGGACGATAAAATCATCAAGCGTGCGCTGGAG
AACAAGGAGAGCTGCGAGCAGCTGACCGAGCGTATGCTGGCGGAGATGCATCGCGACTTTGATGCCCTGAATATCGCCCG
TCCCGACGTGGAGCCGCGCGCGACCCACCATATCGCCGAGATCATCGCGCTGGTGGAGCAGCTGATCGCCCGCGATCATG
CCTATGTGGCCAGCAACGGCGACGTGATGTTCGCCGTCGATACCGATCCGGACTACGGCGTGCTGTCGCGCCAGGATCTG
GAGCAGCTGCAGGCCGGTGCGCGGGTGGAGGTGGCCGACGTGAAGCGCAACCCGATGGACTTTGTGCTGTGGAAGATGTC
CAAGCCGGGCGAGCCGAGCTGGCCGTCACCGTGGGGCGAAGGGCGCCCCGGCTGGCACATCGAGTGCTCGGCGATGAACT
GCAAGCAGCTGGGCGCGCACTTTGATATTCACGGCGGCGGTTCGGACCTGATGTTCCCGCACCATGAGAACGAGATTGCC
CAGTCGACCTGCGCCCACGACGGCGCCTACGTCAACTACTGGATGCACTCCGGCATGGTGATGATCGATCGCGAGAAGAT
GTCCAAGTCGCTGGGCAACTTCTTCACCATCCGCGACGTGCTGGCGCACTATGACGCGGAGACGGTGCGTTACTTCCTGA
TGTCCGGCCACTACCGCAGCCAGCTGAACTACAGCGAAGAGAACCTGAAGCAGGCGCGTGCGGCGCTGGAGCGTCTGTAT
ACCGCGCTGCGCGGCACCGACGCCGCGGCGCAGCCGGCGGCGGATGAGACCTTTACCGCGCGCTTCCGGGCGGCGATGGA
TGATGACTTCAACACGCCGGAGGCCTACTCCGTACTGTTCGACATGGCGCGTGAGATCAACCGTCTGAAAGGGGAGGACA
TGGCGCAGGCGAGTGCGCTGGCGGCGCAGATGCGCGGTCTGGCCCACGTCCTGGGGCTGCTGGAGCAGACGCCGGAGCAC
TTCCTGCAGAGCGGCGCCGCGGCAGGCGATGACGAGGTTGCGCAGATCGAGGCGCTGATCAAGCAGCGCAACGATGCCCG
CGCCGCCAAAGCATGGGCGCTTGCCGATGAGGCGCGTGACAGCCTGAATGCGATGGGGATCGTGCTGGAGGATGGGCCGC
AGGGCACCACCTGGCGGCGTAAGTAA