Detailed information of regulator


Summary

Regulator ID REG0211 experimental
Regulator type protein
Regulatory pathway (from literatures) TCS regulatory pathway
KEGG pathway (determined by BlastKOALA) Metabolic pathways (map01100); Biosynthesis of secondary metabolites (map01110); Microbial metabolism in diverse environments (map01120); Biosynthesis of amino acids (map01230); Lysine biosynthesis (map00300); Monobactam biosynthesis (map00261)
Related T6SS T6SS00372 experimental (Type i4b)
Strain Edwardsiella tarda EIB202
Replicon chromosome
Sequence Protein sequence (294 a.a.); Nucleotide sequence (882 bp)
Description Putative repressors of esrB as identified by Tn-seq.
Reference

External database links

Locus tag (Gene) ETAE_1096 (dapA)
Coordinates (Strand) 1194778..1195659 (+)
NCBI ID 502610962
RefSeq NC_013508
Uniprot ID D0ZEY7_EDWTE, A0A0H3DT64_EDWTF
KEGG ID etr:ETAE_1096, etd:ETAF_1023
KEGG pathway (determined by BlastKOALA) map01100; map01110; map01120; map01230; map00300; map00261
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
ETAE_0886 (esrB) promoter -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
DHDPS PF00701.24 9.5e-114 2..289

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-293 MFTGSIVALVTPMDDKGNVDRASLKKLVDYHVASGTSAIVAVGTTGESATLSHDEHVNVVLQTLELADGRIPVIAGAGANATAEAIALTERFNHSGVVGCLSVTPYYNKPTQEGLYQHFRAIASCTDLPQILYNVPSRTGCDMLPETVARLAQIDNIIAIKEATGNLSRVGQIQDLVNDDRFILLSGDDASALDFMRLGGKGVISVTANVAARQMAEMCRLTLAGDFHAARRLNLSLMPLHRDLFIEANPIPVKWATKVLGLIATDTLRLPLTPLSASAHPAVERALQHAGVL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9528 - -



  Protein sequence of regulator: 294 a.a.    .

>REG0211 NC_013508:1194778-1195659 [Edwardsiella tarda EIB202]
MFTGSIVALVTPMDDKGNVDRASLKKLVDYHVASGTSAIVAVGTTGESATLSHDEHVNVVLQTLELADGRIPVIAGAGAN
ATAEAIALTERFNHSGVVGCLSVTPYYNKPTQEGLYQHFRAIASCTDLPQILYNVPSRTGCDMLPETVARLAQIDNIIAI
KEATGNLSRVGQIQDLVNDDRFILLSGDDASALDFMRLGGKGVISVTANVAARQMAEMCRLTLAGDFHAARRLNLSLMPL
HRDLFIEANPIPVKWATKVLGLIATDTLRLPLTPLSASAHPAVERALQHAGVL*

  Nucleotide sequence of regulator: 882 bp    .

>REG0211 NC_013508:1194778-1195659 [Edwardsiella tarda EIB202]
ATGTTCACGGGAAGTATTGTAGCGCTGGTAACGCCGATGGATGACAAGGGAAATGTCGATCGCGCGAGCCTGAAAAAGTT
GGTCGATTACCATGTCGCCAGCGGGACGTCCGCCATTGTTGCCGTGGGCACCACCGGTGAGTCCGCCACGCTGAGCCATG
ACGAGCATGTCAACGTGGTTTTACAGACGCTGGAGCTGGCCGATGGCCGGATTCCGGTGATCGCCGGGGCGGGCGCTAAC
GCCACCGCCGAGGCCATTGCGCTGACCGAGCGTTTTAATCACAGCGGGGTGGTGGGATGTCTGTCGGTCACGCCGTATTA
TAATAAGCCGACGCAGGAAGGGTTGTATCAGCACTTCCGTGCCATCGCCTCTTGTACCGATCTGCCGCAGATTCTGTATA
ACGTGCCGTCGCGCACCGGTTGCGATATGCTGCCGGAGACCGTGGCGCGTTTGGCGCAGATTGACAATATTATCGCGATT
AAAGAAGCGACCGGGAACTTAAGCCGCGTTGGGCAGATCCAAGATCTGGTCAACGACGATCGCTTTATCCTGCTCAGCGG
TGATGATGCCTCGGCGCTGGACTTTATGCGTCTGGGCGGAAAAGGGGTTATCTCGGTAACCGCGAACGTGGCCGCGCGCC
AGATGGCGGAAATGTGCCGCCTGACGCTGGCCGGGGATTTCCATGCCGCACGCAGGCTAAACCTGAGCCTGATGCCGCTG
CATCGCGATCTGTTTATAGAAGCAAACCCGATACCGGTAAAATGGGCCACCAAGGTATTGGGACTGATAGCGACCGACAC
CCTGCGTCTGCCGCTGACACCGCTGAGCGCCAGTGCGCACCCGGCGGTTGAGCGCGCACTGCAGCATGCCGGTGTGCTGT
AA