Detailed information of regulator
Summary
| Regulator ID | REG0202  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | Unknown |
| KEGG pathway (determined by BlastKOALA) | Two-component system (map02020); Biofilm formation - Pseudomonas aeruginosa (map02025) |
| Related T6SS | T6SS00287 (Type i4b) |
| Strain | Xanthomonas oryzae pv. oryzae PXO99A |
| Replicon | chromosome |
| Sequence | Protein sequence (129 a.a.); Nucleotide sequence (387 bp) |
| Description | - |
| Reference |
External database links
| Locus tag (Gene) | PXO_RS20535 |
| Coordinates (Strand) | 4488457..4488843 (-) |
| NCBI ID | 499576999 |
| RefSeq | NC_010717 |
| Uniprot ID | A0A0K0GPS7_XANOP |
| KEGG ID | xop:PXO_02637 |
| KEGG pathway (determined by BlastKOALA) | map02020; map02025 |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| Unknown | ↓ | - |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Response_reg | PF00072.26 | 1.3e-26 | 4..114 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-128 | MARILIVDDSPSQLLGIQRIVEKLGHETIIATDGAAGVEAAKESLPDLVLMDVVMPNLNGFQATRTLKREPTTQHIPVILVTTKDQDTDRMWGMRQGARAYITKPFSEDELLEVMERVFNQKDETPKA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9977 | - | - |
Protein sequence of regulator: 129 a.a. .
>REG0202 NC_010717:c4488843-4488457 [Xanthomonas oryzae pv. oryzae PXO99A]
MARILIVDDSPSQLLGIQRIVEKLGHETIIATDGAAGVEAAKESLPDLVLMDVVMPNLNGFQATRTLKREPTTQHIPVIL
VTTKDQDTDRMWGMRQGARAYITKPFSEDELLEVMERVFNQKDETPKA*
MARILIVDDSPSQLLGIQRIVEKLGHETIIATDGAAGVEAAKESLPDLVLMDVVMPNLNGFQATRTLKREPTTQHIPVIL
VTTKDQDTDRMWGMRQGARAYITKPFSEDELLEVMERVFNQKDETPKA*
Nucleotide sequence of regulator: 387 bp .
>REG0202 NC_010717:c4488843-4488457 [Xanthomonas oryzae pv. oryzae PXO99A]
ATGGCACGTATTTTGATCGTCGACGACTCACCGTCCCAACTGCTGGGGATTCAGCGCATCGTGGAGAAGCTGGGGCACGA
AACCATCATCGCCACCGATGGGGCAGCGGGCGTAGAAGCGGCCAAGGAATCGCTGCCCGATTTGGTGCTTATGGATGTGG
TGATGCCTAACCTCAACGGGTTCCAGGCCACACGCACACTCAAGCGCGAGCCCACCACCCAGCACATTCCGGTGATCCTG
GTCACCACCAAGGATCAGGACACCGACCGTATGTGGGGCATGCGCCAAGGCGCCCGCGCCTACATCACCAAGCCGTTTTC
AGAAGATGAACTGCTGGAAGTGATGGAGCGCGTGTTCAATCAGAAAGACGAAACGCCGAAAGCATAG
ATGGCACGTATTTTGATCGTCGACGACTCACCGTCCCAACTGCTGGGGATTCAGCGCATCGTGGAGAAGCTGGGGCACGA
AACCATCATCGCCACCGATGGGGCAGCGGGCGTAGAAGCGGCCAAGGAATCGCTGCCCGATTTGGTGCTTATGGATGTGG
TGATGCCTAACCTCAACGGGTTCCAGGCCACACGCACACTCAAGCGCGAGCCCACCACCCAGCACATTCCGGTGATCCTG
GTCACCACCAAGGATCAGGACACCGACCGTATGTGGGGCATGCGCCAAGGCGCCCGCGCCTACATCACCAAGCCGTTTTC
AGAAGATGAACTGCTGGAAGTGATGGAGCGCGTGTTCAATCAGAAAGACGAAACGCCGAAAGCATAG