Detailed information of regulator


Summary

Regulator ID REG0172 experimental
Regulator type protein
Regulatory pathway (from literatures) QS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00152 experimental (Type i1)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (105 a.a.); Nucleotide sequence (315 bp)
Description The expression of H2-T6SS machinery genes was controlled at a transcriptional level by QslA.
Reference

External database links

Locus tag (Gene) PA14_48150 (QslA)
Coordinates (Strand) 4286222..4286536 (+)
NCBI ID 489177206
RefSeq NC_008463
Uniprot ID A0A071L909_PSEAI
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
H2-T6SS (PA14_43050) promotor 489210784

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
QslA_E PF18226.3 1.2e-37 27..97

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-104 MTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEGQLWTAFAFGRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9866 - -



  Protein sequence of regulator: 105 a.a.    .

>REG0172 NC_008463:4286222-4286536 [Pseudomonas aeruginosa UCBPP-PA14]
MTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEGQLWTAFAFGRDSLPTPM
QKTAFEVAFLTRLQQRLVAARRSG*

  Nucleotide sequence of regulator: 315 bp    .

>REG0172 NC_008463:4286222-4286536 [Pseudomonas aeruginosa UCBPP-PA14]
ATGACGAAGGATGAAAAGGAAAAGACCCACGTCGACGCAATCATCGAACGCTACAAGGACCTGATGGTCGAGATTCCCCC
CGCCGACCGGCAACCCGGTCTCTCCCTGCTCTGGCCGGTTCCCGCCCAGCCCGCCATCGACAAGGGCGTCCGCCAGGCCG
AGAACTGGCTTGCCGACCAGATCGAAGGCCAGCTCTGGACCGCCTTCGCCTTCGGCCGCGACAGCCTGCCCACACCGATG
CAGAAGACCGCCTTCGAAGTGGCCTTCCTGACGCGCCTGCAGCAGCGCCTGGTAGCCGCTCGACGTTCCGGTTGA