Detailed information of regulator


Summary

Regulator ID REG0159 experimental
Regulator type protein
Regulatory pathway (from literatures) c-di-GMP regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00150 experimental (Type i3)
Strain Pseudomonas aeruginosa UCBPP-PA14
Replicon chromosome
Sequence Protein sequence (436 a.a.); Nucleotide sequence (1308 bp)
Description Overexpression of PA1120 in this strain resulted in a switch between the T3SS and the T6SS, similar to the one observed upon overexpression of wspRR242A.
Reference

External database links

Locus tag (Gene) PA14_RS20260/PA1120 (YfiN/TpbB)
Coordinates (Strand) 4435431..4436738 (-)
NCBI ID 489207392
RefSeq NC_008463
Uniprot ID A0A1C7BNH9_PSEAI, A0A0H2Z7X0_PSEAB, A0A0T6KSV7_PSEAI
KEGG ID pau:PA14_49890
KEGG pathway (determined by BlastKOALA) -
PDB ID -

  Target
Target Regulation (↓/↑) Target sequence
Hcp1 production -

Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-435 LLGWSLWGSTVYLLFFLKDAGVVEFRQAPAAAGLALGDVHRHVGVVEQRRRGIRVLGIEGDADGQRGTHRAAVAEPDRRLHAGDDVVGDAQGVGAGRQRCEQDGEFVATQARHQVAFAQLPTDAHGDVDQHGVAGGMAEAVVDLLETVAVDEQYRQLLAVLAGIAQRPAQAAFEEGAVGQAGQAVVVGLVRQRGVLVLQARLPGFEFVEQGVEVLAQLAQLGDAGFRYALLEIPFAAHGMRDLRQLVERADDTAYQPP*QVEGAQGGKQQAQDHAGETGEQEAQQAAAGAFHLHRTDLLAVVQDRLFGRRAEQPVRQLLFQQVQRPGAFPMPAGQGLPLAVVDDGAGDLFAGGDQRQGFLGGLGIAEDHRGFDGIADGTGDQLLVGVRVGAQGQQADQGHCQPGGEYRDQRHAQVRAIEHPAQRWIGTRIATTTV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9190 - -



  Protein sequence of regulator: 436 a.a.    .

>REG0159 NC_008463:c4436738-4435431 [Pseudomonas aeruginosa UCBPP-PA14]
LLGWSLWGSTVYLLFFLKDAGVVEFRQAPAAAGLALGDVHRHVGVVEQRRRGIRVLGIEGDADGQRGTHRAAVAEPDRRL
HAGDDVVGDAQGVGAGRQRCEQDGEFVATQARHQVAFAQLPTDAHGDVDQHGVAGGMAEAVVDLLETVAVDEQYRQLLAV
LAGIAQRPAQAAFEEGAVGQAGQAVVVGLVRQRGVLVLQARLPGFEFVEQGVEVLAQLAQLGDAGFRYALLEIPFAAHGM
RDLRQLVERADDTAYQPP*QVEGAQGGKQQAQDHAGETGEQEAQQAAAGAFHLHRTDLLAVVQDRLFGRRAEQPVRQLLF
QQVQRPGAFPMPAGQGLPLAVVDDGAGDLFAGGDQRQGFLGGLGIAEDHRGFDGIADGTGDQLLVGVRVGAQGQQADQGH
CQPGGEYRDQRHAQVRAIEHPAQRWIGTRIATTTVH

  Nucleotide sequence of regulator: 1308 bp    .

>REG0159 NC_008463:c4436738-4435431 [Pseudomonas aeruginosa UCBPP-PA14]
CTACTTGGGTGGAGCCTCTGGGGTAGCACTGTCTATCTCCTTTTCTTCCTGAAGGATGCGGGGGTCGTTGAGTTCCGCCA
GGCGCCGGCTGCCGCGGGCCTGGCGCTTGGCGATGTACATCGCCATGTCGGCGTCGTGGAGCAGCGCCGCCGGGGTATCC
GCGTGCTCGGGATAGAGGGCGATGCCGATGGTCAGCGAGGTACTCACCGTGCTGCCGTCGCTGAGCCGGATCGGCGCCTG
CATGCTGGCGATGATGTTGTCGGCGATGCGCAGGGCGTCGGCGCCGGACGCCAGCGGTGCGAGCAGGACGGCGAATTCGT
CGCCACCCAGGCGCGCCACCAGGTCGCTTTCGCGCAACTGCCCACGGATGCGCATGGCGATGTTGACCAGCACGGTGTCG
CCGGCGGCATGGCCGAGGCGGTCGTTGATCTCCTTGAAACGGTCGCTGTCGATGAACAGTACCGCCAATTGCTCGCGGTG
CTCGCTGGCATCGCGCAGCGCCCGGCTCAGGCGGCCTTCGAAGAAGGCGCGGTTGGGCAGGCTGGTCAGGCTGTCGTGGT
GGGCCTGGTGCGCCAGCGAGGCGTTCTCGTCCTGCAAGCGCGCCTGCCAGGATTCGAGTTCGTCGAGCAGGGCGTTGAAG
TCCTCGCCCAGTTGGCTCAGCTCGGCGATGCCGGCTTCCGGTACGCGCTTCTCGAAATCCCGTTCGCGGCGCACGGTATG
CGCGACCTTCGCCAGTTGGTCGAGCGGGCCGACGATACCGCGTACCAGCCGCCGTGACAGGTAGAAGGCGCCCAGGGCGG
TAAGCAGCAGGCACAGGACCATGCCGGCGAAACCGGTGAGCAGGAAGCGCAGCAGGCTGCCGCCGGAGCCTTTCACCTCC
ACCGAACCGATCTTCTGGCCGTCGTGCAGGATCGGTTGTTCGGTCGGCGCGCTGAGCAGCCAGTGCGCCAGTTGCTGTTC
CAGCAGGTGCAGCGGCCCGGTGCTTTCCCGATGCCAGCTGGCCAGGGGCTGCCCCTGGCGGTCGTAGACGATGGCGCTGG
AGACCTCTTCGCTGGAGGCGATCAGCGCCAGGGATTCCTCGGCGGCCTGGGCATCGCCGAAGACCACCGCGGCTTCGACG
GTATAGCTGATGGAACGGGCGATCAGTTGCTGGTTGGGGTCCGCGTAGGCGCGCAGGGTCAGCAGGCCGACCAGGGTCAC
TGCCAGCCCGGCGGTGAATACCGCGACCAGCGCCACGCCCAGGTGCGCGCGATAGAGCACCCGGCGCAGCGATGGATTGG
AACCCGTATAGCGACGACGACGGTTCAT