Detailed information of regulator
Summary
| Regulator ID | REG0157  |
| Regulator type | protein |
| Regulatory pathway (from literatures) | RsmA regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS00150 (Type i3) |
| Strain | Pseudomonas aeruginosa PA103 |
| Replicon | chromosome |
| Sequence | - |
| Description | Compared with wild-type PA103, PtssA1-lacZ transcriptional and translational reporter activity remained unaffected in the rsmF mutant, but was slightly derepressed in the rsmA mutant and significantly derepressed in an rsmAF mutant. RNA EMSA experiments showed rmsF was capable of shifting the probe (AUAGGGAGAT).; RsmF Binds the Small Regulatory RNAs RsmY and RsmZ with Reduced Affinity and Stoichiometry Compared with RsmA. |
| Reference |
External database links
| Locus tag (Gene) | rmsF |
| Coordinates (Strand) | - |
| NCBI ID | - |
| RefSeq | NZ_JARI00000000 |
| Uniprot ID | - |
| KEGG ID | - |
| KEGG pathway (determined by BlastKOALA) | - |
| PDB ID | - |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| tssA1 RNA | ↑ | AUAGGGAGAT |
| RsmY/Z | ↑ | - |
Pfam domain hit(s) of regulator
| Domain | Pfam ID | E-value | Aligned region |
|---|