Detailed information of regulator


Summary

Regulator ID REG0123 experimental
Regulator type protein
Regulatory pathway (from literatures) Global regulator
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00084 experimental (Type i1)
Strain Aliivibrio fischeri ES114
Replicon chromosome
Sequence Protein sequence (210 a.a.); Nucleotide sequence (630 bp)
Description TfoX production led to a high induction of T6SS transcripts.
Reference
External database links

Locus tag (Gene) VF0896 (TfoX)
Coordinates (Strand) 986000..986629 (+)
NCBI ID 59711503
RefSeq NC_006840
Uniprot ID TFOX_ALIF1
KEGG ID vfi:VF_0896
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
T6SS transcripts ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
TfoX_C PF04994.15 2.3e-26 129..208
TfoX_N PF04993.15 5.3e-23 27..116
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-209 MTGTGDVNLKIKEIEMSHLEERFFNFVKKLGRFNKRSMFGGVGLFNEDAMFSLVTDGRLYVRGGGEVDARFEELGCERFKHVKKTTIATVNYFDVTELFEKKPASLLSIVQEAMENSRLEREFKKSKENRRLRDLPNMQLTLERMVKKAGVPDVDSFLEIGAVDVFKKVNHTYGGDVDVKLLWKFAGAESGVHWTLLQEPAKQALLQQV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence of regulator: 210 a.a.    .

>REG0123 NC_006840:986000-986629 [Aliivibrio fischeri ES114]
MTGTGDVNLKIKEIEMSHLEERFFNFVKKLGRFNKRSMFGGVGLFNEDAMFSLVTDGRLYVRGGGEVDARFEELGCERFK
HVKKTTIATVNYFDVTELFEKKPASLLSIVQEAMENSRLEREFKKSKENRRLRDLPNMQLTLERMVKKAGVPDVDSFLEI
GAVDVFKKVNHTYGGDVDVKLLWKFAGAESGVHWTLLQEPAKQALLQQV*

  Nucleotide sequence of regulator: 630 bp    .

>REG0123 NC_006840:986000-986629 [Aliivibrio fischeri ES114]
ATGACAGGGACGGGGGATGTTAATTTAAAGATCAAGGAGATCGAGATGAGTCATCTAGAAGAGCGCTTTTTTAACTTTGT
AAAAAAACTGGGAAGATTTAATAAACGTTCAATGTTTGGTGGTGTTGGATTGTTTAATGAAGATGCTATGTTCTCACTTG
TTACTGACGGACGATTATATGTTCGTGGTGGTGGTGAAGTAGATGCTCGGTTTGAAGAGTTAGGTTGTGAGCGTTTCAAG
CATGTTAAGAAGACGACAATTGCTACTGTAAATTATTTTGATGTTACTGAGTTATTTGAAAAGAAACCGGCTTCTCTTCT
TTCTATTGTTCAAGAAGCTATGGAAAATTCTCGTTTAGAAAGAGAATTTAAAAAATCAAAAGAAAACCGCCGTTTACGTG
ACTTACCAAATATGCAACTGACATTAGAAAGAATGGTCAAAAAAGCAGGAGTTCCTGATGTTGATTCATTTCTGGAAATT
GGTGCTGTTGATGTATTTAAAAAAGTGAATCACACCTATGGTGGTGATGTGGATGTTAAGCTACTTTGGAAATTTGCTGG
AGCGGAGTCAGGCGTTCATTGGACTTTATTACAAGAGCCTGCAAAGCAAGCATTATTGCAGCAAGTTTAA