Detailed information of regulator


Summary

Regulator ID REG0062 experimental
Regulator type protein
Regulatory pathway (from literatures) QS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00004 experimental (Type i1)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (114 a.a.); Nucleotide sequence (342 bp)
Description The expression of H2-T6SS machinery genes was controlled at a transcriptional level by QslA.
Reference
External database links

Locus tag (Gene) PA1244 (QslA)
Coordinates (Strand) 1348060..1348401 (-)
NCBI ID 15596441
RefSeq NC_002516
Uniprot ID Q9I494_PSEAE
KEGG ID pae:PA1244
KEGG pathway (determined by BlastKOALA) -
PDB ID 4NG2
  Target
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Target
Regulation (↓/↑)
Target sequence
H2-T6SS (PA1656) promotor↑15596853
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Pfam domain hit(s) of regulator

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Domain
Pfam ID
E-value
Aligned region
QslA_EPF18226.31.5e-3736..106
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-113VTLRNGVPSMTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEGQLWTAFAFGRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9867--


  Protein sequence of regulator: 114 a.a.    .

>REG0062 NC_002516:c1348401-1348060 [Pseudomonas aeruginosa PAO1]
VTLRNGVPSMTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEGQLWTAFAF
GRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG*

  Nucleotide sequence of regulator: 342 bp    .

>REG0062 NC_002516:c1348401-1348060 [Pseudomonas aeruginosa PAO1]
GTGACTCTCAGAAACGGAGTACCCAGCATGACGAAGGATGAAAAGGAAAAGACCCACGTCGACGCAATCATCGAACGCTA
CAAGGACCTGATGGTCGAGATTCCCCCCGCCGACCGGCAACCCGGTCTCTCCCTGCTCTGGCCGGTTCCCGCCCAGCCCG
CCATCGACAAGGGCGTCCGCCAGGCCGAGAACTGGCTTGCCGACCAGATCGAAGGCCAGCTCTGGACCGCCTTCGCCTTC
GGCCGCGACAGCCTGCCCACACCGATGCAGAAGACCGCCTTCGAAGTGGCCTTCCTGACGCGCCTGCAGCAGCGCCTGGT
AGCCGCTCGACGTTCCGGTTGA