Detailed information of regulator
Summary
| Regulator ID | REG0028  |
| Regulator type | ncRNA |
| Regulatory pathway (from literatures) | QS regulatory pathway |
| KEGG pathway (determined by BlastKOALA) | - |
| Related T6SS | T6SS01168 (Type i1) |
| Strain | Vibrio cholerae C6706 |
| Replicon | chromosome |
| Sequence | - |
| Description | V. cholerae Qrr4 repressed VCA0107–GFP (∼ 5‐fold) in E. coli, suggesting that the Qrr sRNAs repress the large T6SS cluster through base pairing to the 5′ UTR of the mRNA and when the predicted base pairing region SL2 of the Qrr sRNA in the 5′ UTR of the large T6SS cluster is mutated to its complementary sequence, regulation by Qrr4 is lost. |
| Reference |
External database links
| Locus tag (Gene) | Qrr4 quorum regulatory RNA |
| Coordinates (Strand) | - |
| NCBI ID | - |
| RefSeq | NZ_CP046844 |
Target
| Target | Regulation (↓/↑) | Target sequence |
|---|---|---|
| VCA0107 mRNA | ↑ | GUAUAAUGCAGAGGUUAUGGAUACGGUUUGCAACAGUUACUUUGUCAACUAACUUUAGUAAGUU Putative base pairing between V. cholerae Qrr4 and the VCA0107 5′ UTR |