Detailed information of regulator


Summary

Regulator ID REG0026 experimental
Regulator type ncRNA
Regulatory pathway (from literatures) QS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS01168 experimental (Type i1)
Strain Vibrio cholerae C6706
Replicon chromosome
Sequence -
Description V. cholerae Qrr4 repressed VCA0107–GFP (∼ 5‐fold) in E. coli, suggesting that the Qrr sRNAs repress the large T6SS cluster through base pairing to the 5′ UTR of the mRNA and when the predicted base pairing region SL2 of the Qrr sRNA in the 5′ UTR of the large T6SS cluster is mutated to its complementary sequence, regulation by Qrr4 is lost.
Reference

External database links

Locus tag (Gene) Qrr2 quorum regulatory RNA
Coordinates (Strand) -
NCBI ID -
RefSeq NZ_CP046844

  Target
Target Regulation (↓/↑) Target sequence
VCA0107 mRNA GUAUAAUGCAGAGGUUAUGGAUACGGUUUGCAACAGUUACUUUGUCAACUAACUUUAGUAAGUU Putative base pairing between V. cholerae Qrr4 and the VCA0107 5′ UTR