Detailed information of immunity protein


Summary

Immunity protein ID IMU17309 experimental
Cognate effector EFF18629 experimental
Related T6SS (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis strain 85003
Replicon chromosome
Sequence Protein sequence (689 a.a.); Nucleotide sequence (2067 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) tssI2_a
Coordinates (Strand) 2490..4556 (+)
NCBI ID ARK19413.1
GenBank KY319185
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.8e-75 45..339
Phage_base_V PF04717.14 4.8e-14 397..463
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-688 MATLKYQFHVEGLEDDTLVVRGFDGQETLSSERMNGQLLNEQPCHGFRYELELASRLANLTPDMVVDKVAELTLYRDDILVQRVNGIVRRFTQGDTGHHHTFYSLTLVPALERLSLRHNSRIFQLNTVPEILSVLLQEMGINDYAFALTRDCAQREFCVQYRETDLDFFHRLAAEEGLVYSFIHEEGKHTLIFSDASESLPKLGEPIPYNTLAGGMIESPYISALSVHTQSEVSQTALQDYSFKKPAYSFAQQAVGTEMESQQPDYEHFDAPGRYKNDVSGKAFSQIRLDYLRRNAHTATGKSNQPLLRPGVKFDLQEHLDDTLNRDWLVVSVTSQGTQPQALEEAGGNGATTYANQFSLIPAHRTWRATPQAKPQVDGPMIATVVGPQGEEIFCDEHGRVKLHFPWDRYSNGDEHSSCWVRVSQGWAGSQYGMIAIPRIGHEVIVSFLNGDPDQPIVTGRTYHATNIAPYALPDNKTKTVLRTETHQGQGYNELSFEDQAGSEKIYLHAQKDFDGLIENDHTSVIKHDKHLTVENDRFTQIKNNQHLTVGGESRESVTGNRTLMVEGSLHVKTGSVWVNESGTEVHIKAGQKVVIEAGSEITVKAGGSFVKVDPAGVHLSGAGVNLNSGGSPGSGSGFSGQAATLPGNLDDAPPLDAPKTVSYQALLQAEEANVPAVKPCPLAEGNS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -


  Protein sequence: 689 a.a.    .

>IMU17309 KY319185:2490-4556 [Vibrio fluvialis]
MATLKYQFHVEGLEDDTLVVRGFDGQETLSSERMNGQLLNEQPCHGFRYELELASRLANLTPDMVVDKVAELTLYRDDIL
VQRVNGIVRRFTQGDTGHHHTFYSLTLVPALERLSLRHNSRIFQLNTVPEILSVLLQEMGINDYAFALTRDCAQREFCVQ
YRETDLDFFHRLAAEEGLVYSFIHEEGKHTLIFSDASESLPKLGEPIPYNTLAGGMIESPYISALSVHTQSEVSQTALQD
YSFKKPAYSFAQQAVGTEMESQQPDYEHFDAPGRYKNDVSGKAFSQIRLDYLRRNAHTATGKSNQPLLRPGVKFDLQEHL
DDTLNRDWLVVSVTSQGTQPQALEEAGGNGATTYANQFSLIPAHRTWRATPQAKPQVDGPMIATVVGPQGEEIFCDEHGR
VKLHFPWDRYSNGDEHSSCWVRVSQGWAGSQYGMIAIPRIGHEVIVSFLNGDPDQPIVTGRTYHATNIAPYALPDNKTKT
VLRTETHQGQGYNELSFEDQAGSEKIYLHAQKDFDGLIENDHTSVIKHDKHLTVENDRFTQIKNNQHLTVGGESRESVTG
NRTLMVEGSLHVKTGSVWVNESGTEVHIKAGQKVVIEAGSEITVKAGGSFVKVDPAGVHLSGAGVNLNSGGSPGSGSGFS
GQAATLPGNLDDAPPLDAPKTVSYQALLQAEEANVPAVKPCPLAEGNS*

  Nucleotide sequence: 2067 bp    .

>IMU17309 KY319185:2490-4556 [Vibrio fluvialis]
ATGGCGACGTTAAAGTATCAGTTTCATGTGGAAGGTCTGGAGGACGACACGCTGGTGGTGCGTGGGTTCGACGGACAGGA
AACGCTTTCCAGCGAACGCATGAATGGGCAGTTATTGAATGAACAGCCGTGCCACGGTTTTCGTTATGAACTGGAGCTGG
CCAGTCGGCTTGCTAATTTAACGCCCGATATGGTGGTGGATAAAGTCGCGGAGCTGACGCTCTATCGCGACGATATACTG
GTTCAGCGCGTGAACGGCATCGTGCGCCGCTTTACGCAGGGCGATACCGGCCATCACCACACTTTTTACTCGCTGACGCT
GGTGCCGGCTTTAGAGCGTTTGTCTCTACGCCACAACAGCCGCATCTTCCAACTCAACACTGTGCCGGAAATCCTCTCTG
TTCTGTTGCAGGAAATGGGCATTAATGACTACGCCTTTGCGCTGACCCGCGACTGCGCGCAGCGTGAATTCTGCGTTCAG
TACCGCGAAACCGACCTCGATTTTTTCCATCGCCTCGCGGCCGAAGAAGGGCTGGTGTACAGCTTCATTCATGAAGAGGG
CAAACACACGCTGATATTCAGCGACGCCTCAGAGAGCCTACCGAAACTCGGTGAACCAATTCCGTACAACACGCTGGCGG
GCGGCATGATTGAATCACCGTACATCTCGGCGCTGAGCGTGCACACCCAATCGGAGGTGAGCCAGACGGCGCTGCAAGAC
TACAGTTTTAAAAAGCCAGCGTACTCGTTTGCCCAGCAAGCGGTCGGGACAGAAATGGAGTCCCAGCAACCAGACTACGA
ACATTTCGATGCGCCGGGGCGGTATAAAAACGATGTCAGCGGTAAAGCATTCAGCCAGATCCGCCTTGATTACCTGCGCC
GCAACGCGCACACCGCGACGGGAAAAAGCAACCAACCGTTGCTGCGTCCGGGGGTGAAGTTTGACCTGCAAGAGCACCTC
GACGACACCTTAAACCGAGACTGGTTGGTGGTGAGTGTCACCAGCCAAGGCACGCAGCCTCAGGCGCTGGAAGAAGCCGG
AGGTAATGGCGCGACCACCTACGCGAACCAATTTTCGCTCATCCCAGCGCATCGCACTTGGCGCGCCACGCCGCAAGCCA
AACCTCAGGTTGATGGCCCGATGATCGCCACTGTCGTTGGCCCGCAAGGCGAAGAGATCTTCTGCGATGAACACGGCCGA
GTAAAACTGCATTTTCCGTGGGATCGCTACTCCAACGGTGATGAGCACAGCTCGTGCTGGGTGCGCGTCTCGCAAGGTTG
GGCGGGCAGCCAATATGGCATGATTGCCATTCCACGCATCGGCCATGAAGTGATTGTGTCGTTTCTCAATGGTGACCCGG
ACCAGCCGATTGTCACCGGCCGTACCTATCACGCCACCAACATTGCGCCATATGCACTACCGGACAACAAAACCAAAACC
GTGCTGCGCACCGAAACCCATCAGGGGCAGGGCTATAACGAACTCAGTTTTGAAGACCAAGCGGGCAGTGAGAAAATTTA
TCTGCACGCACAGAAAGACTTTGATGGCCTGATTGAAAACGACCACACCAGCGTGATTAAGCACGACAAACACCTCACGG
TGGAGAACGACCGCTTTACTCAAATCAAAAACAATCAGCATCTGACGGTGGGTGGAGAAAGCCGTGAATCAGTGACCGGG
AACCGAACTCTGATGGTTGAAGGCTCATTGCATGTGAAAACCGGCAGTGTTTGGGTGAATGAATCGGGTACTGAAGTTCA
TATTAAAGCGGGCCAAAAGGTCGTCATTGAAGCTGGCTCCGAAATCACCGTGAAAGCGGGCGGCAGCTTTGTGAAAGTCG
ACCCGGCAGGGGTTCATCTATCTGGTGCAGGCGTGAACCTGAACTCGGGCGGTAGCCCGGGCAGTGGCAGTGGTTTCAGT
GGCCAAGCTGCCACACTACCGGGCAATTTGGACGATGCGCCGCCACTGGATGCTCCGAAAACGGTTTCTTACCAAGCTTT
GTTGCAGGCAGAGGAAGCCAATGTGCCTGCAGTGAAACCTTGTCCACTAGCGGAGGGTAATTCATGA