Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00341  |
| Cognate effector | - |
| Related T6SS (Type) | T6SS01224 (Type i1) |
| Strain | Vibrio alginolyticus 12G01 |
| Replicon | chromosome |
| Sequence | Protein sequence (253 a.a.); Nucleotide sequence (759 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | V12G01_01430 |
| Coordinates (Strand) | 97561..98319 (-) |
| NCBI ID | 91190359 |
| RefSeq | NZ_CH902589 |
| Uniprot ID | UPI0000D54607 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-252 | MNKMITFSLIFLSTYSFAESSITQEQKFTEAEGPFCQYSLKANGTSYDFSFFDSCGTSDLIKLNEELYLVDLTNGNINSEAYFIFDTEKKEVPKEIGSLNLSYDIYDYGFDIIDHTLLDRDNGKIIKNANNNYTGVLSYIFQRDNFNMNIPKDRILYWNRNGEENYCSSTIVFSANYDEHRRDVCWNSFSSRYEYVEIIEGRVSLRIKGEFDGRQFKFDNNGEELTINPYNGKYSTNKTNEKFPDEDYFNIK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.9937 | pos: 18-19. SFA-ES. | MNKMITFSLIFLSTYSFA |
Protein sequence: 253 a.a. .
>IMU00341 NZ_CH902589:c98319-97561 [Vibrio alginolyticus 12G01]
MNKMITFSLIFLSTYSFAESSITQEQKFTEAEGPFCQYSLKANGTSYDFSFFDSCGTSDLIKLNEELYLVDLTNGNINSE
AYFIFDTEKKEVPKEIGSLNLSYDIYDYGFDIIDHTLLDRDNGKIIKNANNNYTGVLSYIFQRDNFNMNIPKDRILYWNR
NGEENYCSSTIVFSANYDEHRRDVCWNSFSSRYEYVEIIEGRVSLRIKGEFDGRQFKFDNNGEELTINPYNGKYSTNKTN
EKFPDEDYFNIK*
MNKMITFSLIFLSTYSFAESSITQEQKFTEAEGPFCQYSLKANGTSYDFSFFDSCGTSDLIKLNEELYLVDLTNGNINSE
AYFIFDTEKKEVPKEIGSLNLSYDIYDYGFDIIDHTLLDRDNGKIIKNANNNYTGVLSYIFQRDNFNMNIPKDRILYWNR
NGEENYCSSTIVFSANYDEHRRDVCWNSFSSRYEYVEIIEGRVSLRIKGEFDGRQFKFDNNGEELTINPYNGKYSTNKTN
EKFPDEDYFNIK*
Nucleotide sequence: 759 bp .
>IMU00341 NZ_CH902589:c98319-97561 [Vibrio alginolyticus 12G01]
ATGAATAAAATGATTACATTTAGTTTAATCTTTTTATCAACATATTCTTTTGCGGAAAGCAGTATTACGCAAGAGCAAAA
ATTCACAGAGGCTGAGGGGCCTTTTTGTCAATATTCTCTAAAAGCAAATGGAACTTCATATGATTTTAGCTTTTTTGACT
CATGTGGCACAAGCGATTTAATTAAATTGAATGAAGAGCTTTATTTGGTTGACTTGACTAATGGTAATATAAATAGCGAA
GCATACTTTATTTTTGACACAGAAAAAAAAGAAGTTCCAAAAGAGATTGGTAGTTTGAACCTTAGTTATGACATTTACGA
TTATGGTTTTGATATTATCGATCATACATTATTGGACAGAGATAATGGTAAAATAATAAAAAACGCTAATAATAATTATA
CTGGCGTGTTGTCTTACATTTTCCAGAGAGATAATTTTAATATGAATATACCTAAAGATAGGATTTTGTATTGGAATAGA
AATGGAGAAGAGAATTATTGTTCTTCTACAATAGTTTTTTCTGCTAATTATGACGAACATAGGCGAGATGTTTGCTGGAA
TAGTTTTTCATCAAGATATGAATATGTTGAGATTATTGAAGGTAGAGTAAGTTTAAGGATAAAGGGAGAGTTTGATGGAA
GGCAGTTTAAGTTTGATAATAATGGTGAAGAACTGACGATTAATCCATATAATGGAAAGTATAGTACTAACAAAACCAAC
GAAAAATTCCCTGATGAAGACTATTTTAATATAAAGTGA
ATGAATAAAATGATTACATTTAGTTTAATCTTTTTATCAACATATTCTTTTGCGGAAAGCAGTATTACGCAAGAGCAAAA
ATTCACAGAGGCTGAGGGGCCTTTTTGTCAATATTCTCTAAAAGCAAATGGAACTTCATATGATTTTAGCTTTTTTGACT
CATGTGGCACAAGCGATTTAATTAAATTGAATGAAGAGCTTTATTTGGTTGACTTGACTAATGGTAATATAAATAGCGAA
GCATACTTTATTTTTGACACAGAAAAAAAAGAAGTTCCAAAAGAGATTGGTAGTTTGAACCTTAGTTATGACATTTACGA
TTATGGTTTTGATATTATCGATCATACATTATTGGACAGAGATAATGGTAAAATAATAAAAAACGCTAATAATAATTATA
CTGGCGTGTTGTCTTACATTTTCCAGAGAGATAATTTTAATATGAATATACCTAAAGATAGGATTTTGTATTGGAATAGA
AATGGAGAAGAGAATTATTGTTCTTCTACAATAGTTTTTTCTGCTAATTATGACGAACATAGGCGAGATGTTTGCTGGAA
TAGTTTTTCATCAAGATATGAATATGTTGAGATTATTGAAGGTAGAGTAAGTTTAAGGATAAAGGGAGAGTTTGATGGAA
GGCAGTTTAAGTTTGATAATAATGGTGAAGAACTGACGATTAATCCATATAATGGAAAGTATAGTACTAACAAAACCAAC
GAAAAATTCCCTGATGAAGACTATTTTAATATAAAGTGA