Detailed information of immunity protein


Summary

Immunity protein ID IMU00341 experimental
Cognate effector -
Related T6SS (Type) T6SS01224 experimental (Type i1)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (253 a.a.); Nucleotide sequence (759 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) V12G01_01430
Coordinates (Strand) 97561..98319 (-)
NCBI ID 91190359
RefSeq NZ_CH902589
Uniprot ID UPI0000D54607
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-252 MNKMITFSLIFLSTYSFAESSITQEQKFTEAEGPFCQYSLKANGTSYDFSFFDSCGTSDLIKLNEELYLVDLTNGNINSEAYFIFDTEKKEVPKEIGSLNLSYDIYDYGFDIIDHTLLDRDNGKIIKNANNNYTGVLSYIFQRDNFNMNIPKDRILYWNRNGEENYCSSTIVFSANYDEHRRDVCWNSFSSRYEYVEIIEGRVSLRIKGEFDGRQFKFDNNGEELTINPYNGKYSTNKTNEKFPDEDYFNIK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9937 pos: 18-19. SFA-ES. MNKMITFSLIFLSTYSFA



  Protein sequence: 253 a.a.    .

>IMU00341 NZ_CH902589:c98319-97561 [Vibrio alginolyticus 12G01]
MNKMITFSLIFLSTYSFAESSITQEQKFTEAEGPFCQYSLKANGTSYDFSFFDSCGTSDLIKLNEELYLVDLTNGNINSE
AYFIFDTEKKEVPKEIGSLNLSYDIYDYGFDIIDHTLLDRDNGKIIKNANNNYTGVLSYIFQRDNFNMNIPKDRILYWNR
NGEENYCSSTIVFSANYDEHRRDVCWNSFSSRYEYVEIIEGRVSLRIKGEFDGRQFKFDNNGEELTINPYNGKYSTNKTN
EKFPDEDYFNIK*

  Nucleotide sequence: 759 bp    .

>IMU00341 NZ_CH902589:c98319-97561 [Vibrio alginolyticus 12G01]
ATGAATAAAATGATTACATTTAGTTTAATCTTTTTATCAACATATTCTTTTGCGGAAAGCAGTATTACGCAAGAGCAAAA
ATTCACAGAGGCTGAGGGGCCTTTTTGTCAATATTCTCTAAAAGCAAATGGAACTTCATATGATTTTAGCTTTTTTGACT
CATGTGGCACAAGCGATTTAATTAAATTGAATGAAGAGCTTTATTTGGTTGACTTGACTAATGGTAATATAAATAGCGAA
GCATACTTTATTTTTGACACAGAAAAAAAAGAAGTTCCAAAAGAGATTGGTAGTTTGAACCTTAGTTATGACATTTACGA
TTATGGTTTTGATATTATCGATCATACATTATTGGACAGAGATAATGGTAAAATAATAAAAAACGCTAATAATAATTATA
CTGGCGTGTTGTCTTACATTTTCCAGAGAGATAATTTTAATATGAATATACCTAAAGATAGGATTTTGTATTGGAATAGA
AATGGAGAAGAGAATTATTGTTCTTCTACAATAGTTTTTTCTGCTAATTATGACGAACATAGGCGAGATGTTTGCTGGAA
TAGTTTTTCATCAAGATATGAATATGTTGAGATTATTGAAGGTAGAGTAAGTTTAAGGATAAAGGGAGAGTTTGATGGAA
GGCAGTTTAAGTTTGATAATAATGGTGAAGAACTGACGATTAATCCATATAATGGAAAGTATAGTACTAACAAAACCAAC
GAAAAATTCCCTGATGAAGACTATTTTAATATAAAGTGA