Detailed information of immunity protein


Summary

Immunity protein ID IMU00340 experimental
Cognate effector -
Related T6SS (Type) T6SS00939 experimental (Type i5)
Strain Vibrio alginolyticus 12G01
Replicon chromosome
Sequence Protein sequence (524 a.a.); Nucleotide sequence (1572 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) V12G01_RS33565
Coordinates (Strand) 137211..138782 (+)
NCBI ID 91190385
RefSeq NZ_CH902590
Uniprot ID UPI0000D545FB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
BCCT PF02028.19 6.8e-173 33..520
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-28 MTKGIDKYSIDSTDYTVGQDNVQKWGFD
Transmembrane helix 29-51 VHNPVFGISAGLIALFLVAALVL
Outside 52-70 DAHTAKTALDGLKWKIIGS
Transmembrane helix 71-93 FDWLFIIAGNIFVIFCLALIVSP
Inside 94-109 MGKIRLGGKDAVADYS
Transmembrane helix 110-132 FMSWLAMLFAAGMGIGLMFWSVA
Outside 133-167 EPVAYFTGWYETPLGVEANTPEAARLALGATMFHW
Transmembrane helix 168-187 GLHPWAIYGVVALSLAFFAY
Inside 188-206 NKGLPLSMRSIFYPLLGDR
Transmembrane helix 207-229 AWGWAGHIVDILAVLATLFGLAT
Outside 230-251 SLGLGAQQAASGIHHVFGVEPG
Transmembrane helix 252-274 LGLQIVVITVVTLLAVVSVVRGI
Inside 275-280 DGGVKV
Transmembrane helix 281-303 ISNINMVVAFLLLLLVGLIGWAA
Outside 304-332 SLGSIPTTLMAYVENIIPLSNPFGRTDEA
Transmembrane helix 333-355 WFQGWTVFYWAWWISWSPFVGMF
Inside 356-367 IARVSRGRTVRE
Transmembrane helix 368-390 FITAVLLVPTAVTVVWMSVFGGL
Outside 391-419 AIEQVVDKVGELGTNGLTDVSLAMFQMFD
Transmembrane helix 420-442 VLPFGSMLSIIAVVLVLVFFITS
Inside 443-462 SDSGSLVIDSITAGGKVDAP
Transmembrane helix 463-485 VLQRVFWAFMEGAIAVALLWIGG
Outside 486-494 SEAVQALQA
Transmembrane helix 495-517 GAISTALPFTFILLAMCVSLLMG
Inside 518-523 MRTERQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9851 - -


  Protein sequence: 524 a.a.    .

>IMU00340 NZ_CH902590:137211-138782 [Vibrio alginolyticus 12G01]
MTKGIDKYSIDSTDYTVGQDNVQKWGFDVHNPVFGISAGLIALFLVAALVLDAHTAKTALDGLKWKIIGSFDWLFIIAGN
IFVIFCLALIVSPMGKIRLGGKDAVADYSFMSWLAMLFAAGMGIGLMFWSVAEPVAYFTGWYETPLGVEANTPEAARLAL
GATMFHWGLHPWAIYGVVALSLAFFAYNKGLPLSMRSIFYPLLGDRAWGWAGHIVDILAVLATLFGLATSLGLGAQQAAS
GIHHVFGVEPGLGLQIVVITVVTLLAVVSVVRGIDGGVKVISNINMVVAFLLLLLVGLIGWAASLGSIPTTLMAYVENII
PLSNPFGRTDEAWFQGWTVFYWAWWISWSPFVGMFIARVSRGRTVREFITAVLLVPTAVTVVWMSVFGGLAIEQVVDKVG
ELGTNGLTDVSLAMFQMFDVLPFGSMLSIIAVVLVLVFFITSSDSGSLVIDSITAGGKVDAPVLQRVFWAFMEGAIAVAL
LWIGGSEAVQALQAGAISTALPFTFILLAMCVSLLMGMRTERQ*

  Nucleotide sequence: 1572 bp    .

>IMU00340 NZ_CH902590:137211-138782 [Vibrio alginolyticus 12G01]
ATGACAAAGGGTATAGATAAGTACAGTATCGATAGTACCGACTATACGGTAGGTCAGGACAACGTTCAAAAATGGGGTTT
TGATGTTCATAACCCAGTTTTTGGTATTAGTGCAGGTTTAATTGCGCTGTTTCTTGTCGCTGCATTAGTTCTAGATGCAC
ATACCGCAAAGACGGCACTTGATGGGCTGAAGTGGAAAATTATTGGTTCATTCGATTGGTTGTTCATTATTGCAGGTAAC
ATTTTCGTTATTTTCTGTTTGGCGCTTATCGTCTCACCAATGGGTAAGATCCGACTAGGTGGTAAAGACGCTGTTGCCGA
TTACTCGTTTATGTCATGGCTTGCAATGCTATTTGCAGCTGGTATGGGTATCGGTTTAATGTTCTGGAGTGTTGCAGAAC
CTGTCGCTTACTTCACCGGTTGGTATGAAACGCCACTTGGTGTTGAGGCAAATACACCAGAAGCCGCGAGATTGGCACTG
GGTGCAACGATGTTCCACTGGGGCCTTCACCCATGGGCAATTTACGGTGTTGTAGCACTTTCTTTAGCATTCTTTGCCTA
CAACAAAGGTTTACCGCTATCTATGCGTTCGATCTTCTACCCACTTCTGGGTGATCGTGCATGGGGTTGGGCTGGCCACA
TTGTGGACATTCTGGCTGTGCTTGCGACTTTATTTGGTCTTGCTACATCCCTAGGTCTAGGTGCGCAGCAAGCAGCAAGT
GGTATTCATCACGTATTTGGTGTTGAGCCAGGCCTAGGTCTGCAAATCGTCGTTATTACCGTGGTGACTTTACTTGCTGT
TGTTTCAGTCGTACGCGGCATCGATGGTGGTGTTAAAGTCATTAGTAACATCAACATGGTTGTGGCGTTTTTGCTACTTC
TCCTTGTTGGTCTTATCGGTTGGGCGGCGAGCCTAGGCTCGATTCCAACCACACTTATGGCATATGTAGAGAATATCATC
CCACTAAGTAACCCGTTTGGTCGTACGGACGAAGCTTGGTTCCAAGGCTGGACAGTGTTCTACTGGGCTTGGTGGATTTC
ATGGTCGCCATTCGTAGGCATGTTCATCGCGCGTGTTTCTCGTGGCCGTACCGTTCGCGAGTTCATCACAGCAGTTTTGC
TGGTTCCAACGGCGGTTACCGTTGTTTGGATGTCTGTATTTGGTGGCCTGGCGATCGAGCAAGTTGTTGATAAAGTAGGT
GAGCTGGGCACAAATGGCTTGACTGACGTATCACTTGCTATGTTCCAAATGTTTGATGTTCTTCCATTTGGTAGCATGCT
TTCTATCATCGCTGTTGTGCTGGTACTTGTGTTCTTCATTACGTCTTCTGACTCTGGTTCACTTGTTATCGACAGTATCA
CGGCAGGTGGTAAAGTCGATGCACCTGTACTTCAACGTGTCTTCTGGGCATTCATGGAAGGTGCAATTGCGGTTGCTCTG
CTATGGATTGGTGGCTCCGAGGCGGTTCAAGCTCTTCAGGCCGGTGCCATTTCTACAGCACTGCCATTTACCTTCATTCT
GCTTGCAATGTGTGTGAGCTTATTGATGGGTATGAGAACAGAGCGTCAGTAA