Detailed information of immunity protein


Summary

Immunity protein ID IMU00166 experimental
Cognate effector EFF00003 experimental
Related T6SS (Type) T6SS00002 experimental (Type i1)
Strain Vibrio cholerae O1 biovar El Tor str. N16961
Replicon chromosome
Sequence Protein sequence (243 a.a.); Nucleotide sequence (729 bp)
Description TsiV2
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) VCA0021 (TsiV2)
Coordinates (Strand) 26653..27381 (+)
NCBI ID 15600792
RefSeq NC_002506
Uniprot ID TSIV2_VIBCH
KEGG ID vch:VCA0021
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-38MLIDKNELEQLKVKLHSSEVIYQWDSVAYGERRSEIFR
Transmembrane helix39-61VFGAISAGIVPLWPFIFFADIQF
Outside62-65NSKE
Transmembrane helix66-85FWGFICFSLAGMAAARYLFM
Inside86-116PDHRYCYSLTQAGIYYTDQEVIPDAAYTFVR
Transmembrane helix117-139GFAWVGIAVCLLALAVVGPLAFV
Outside140-242GAGGFALLAFGLTNFHPTVHKKEVYFADQLIVFDPIKEKMVDLNTDSTDEPWFDRRLFFSSLDEKTHFIELVKSIHNNVDYLPLQRVNDQYKHPIFNQELKEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9583--


  Protein sequence: 243 a.a.    .

>IMU00166 NC_002506:26653-27381 [Vibrio cholerae O1 biovar El Tor str. N16961]
MLIDKNELEQLKVKLHSSEVIYQWDSVAYGERRSEIFRVFGAISAGIVPLWPFIFFADIQFNSKEFWGFICFSLAGMAAA
RYLFMPDHRYCYSLTQAGIYYTDQEVIPDAAYTFVRGFAWVGIAVCLLALAVVGPLAFVGAGGFALLAFGLTNFHPTVHK
KEVYFADQLIVFDPIKEKMVDLNTDSTDEPWFDRRLFFSSLDEKTHFIELVKSIHNNVDYLPLQRVNDQYKHPIFNQELK
EE*

  Nucleotide sequence: 729 bp    .

>IMU00166 NC_002506:26653-27381 [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGTTAATTGATAAAAATGAGTTAGAGCAGTTAAAGGTAAAATTACACAGCAGTGAGGTTATTTATCAATGGGATAGTGT
GGCTTACGGAGAGAGAAGATCTGAAATATTTCGCGTTTTTGGGGCAATCTCTGCTGGTATTGTTCCCCTTTGGCCATTTA
TTTTTTTTGCAGATATTCAATTTAATAGTAAAGAGTTTTGGGGATTTATCTGCTTTAGTCTGGCGGGCATGGCTGCTGCC
AGATATCTTTTTATGCCCGACCACCGTTATTGCTACAGTTTAACGCAAGCGGGGATTTATTATACGGATCAAGAAGTGAT
CCCAGATGCGGCCTACACTTTTGTGCGTGGTTTTGCTTGGGTGGGGATTGCGGTCTGTTTGTTAGCCTTAGCCGTCGTTG
GCCCGTTAGCGTTTGTCGGTGCGGGCGGTTTTGCCCTGCTGGCCTTTGGTTTGACCAACTTCCACCCCACCGTACATAAG
AAAGAGGTTTACTTTGCTGACCAATTGATTGTTTTTGATCCCATCAAAGAAAAGATGGTGGATTTAAATACAGATAGCAC
AGATGAACCATGGTTTGACAGACGGCTATTTTTTAGTTCACTTGATGAGAAGACGCATTTTATTGAGCTCGTGAAGAGTA
TTCATAATAATGTCGACTATCTTCCGTTACAGCGAGTTAACGATCAGTACAAGCATCCAATCTTTAATCAAGAATTAAAA
GAGGAATAG